BAC Information

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BAC

Clone NameMSMg01-322M04
Chromosome11 (Build37)
Map Location 38,212,475 - 38,212,789
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039148, LOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322M04.T7 (MSMg01no322_m04.b1)MSMg01-322M04.TJ (MSMg01no322_m04.g1)
ACCAG441367AG441368
length707707
length of high quality
(start - end)
320 (45 - 364)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no322_m04.b1 PHD_FILE: MSMg01no322_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:47 2005CHROMAT_FILE: MSMg01no322_m04.g1 PHD_FILE: MSMg01no322_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATGTACTAATGCCTTATTGTATCCAGAAAACACTGACTTCTTGA
AGTTACCCACCACTTCTGGCTCTCTAGAGTTTTCTGCTTCCTCTTCTATG
ATAACCATGGAACGTTGGAAGGAGGTGTGTTTATGGTTTTGTTTTTCTCT
TACAATTGAAGTTTAGTATTTTCATGGGCTTTCGAGCTTTTATACTTTGG
CCCTGTTAGTGTTCACCATTTCAAGAAAAATGCACCATAGAACTTCTATC
CATTTTGGGAAGGTAATTCTTATGTTATTATTTAAATTAACTAGCAATGA
TATTTTGAAGCATATATTTTTTCCCCCGCCCACCTCGGGTACACTCATCT
TTCCTTTAATAATTGTCACCACCGAGATCCGTAATTGGTCGGCTCCCATG
AAGACTCCATATCCTGATCCATCCTAGATTACCTGCTGCACTCAAAGCAG
TTGGTAAGAACCACTCCCCTACCCCCAGTCCCAGAGCTGCTGCTGGGAGC
CTGGTGGACATGGGACCCATCAACCACCAAAACTCCCACCCATCTGAATA
CCACTTCCTTTCAGTCCCTTCCATCCCTTCTTCCCAGTCCTTTTTGCTGG
GGCAGACTCCTAGTTGTTCTGCTTACATGAAGACTACATATCCTGATCTA
TCCTAGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCAAGA
ATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGA
TTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATT
TTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTT
TTCTATCTTTGTTGGATCTTCCTGTCGCCTTAGGTATCAGAGTAATAGTG
GCTTTATAAAATGACCCGCCCAGAGTACTTTCTACTTCTATCTTGTGAAA
AAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTT
ATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAAC
TTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCA
TTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATATCCTTTTGCTATAAGTA
TCTGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_m04.b1 MSMg01no322_m04.b1 CHROMAT_FILE:
MSMg01no322_m04.b1 PHD_FILE: MSMg01no322_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:47 2005
         (320 letters)



>mm_chr11_38212271_38212989
          Length = 719

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatgtactaatgccttattgtatccagaaaacactgacttcttgaagttaccc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatgtacaaatgccttattgtatccagaaaacactgacttcttgaagttaccc 264

                                                                       
Query: 65  accacttctggctctctagagttttctgcttcctcttctatgataaccatggaacgttgg 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accacttctggctgt-tagagttttctgcttcctcttctatgataaccatggaacgttgg 323

                                                                       
Query: 125 aaggaggtgtgtttatggttttgtttttctcttacaattgaagtttagtattttcatggg 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaggaggtatgtttatggttttgtttttctcttacaattgaagtttagtattttcatggg 383

                                                                       
Query: 185 ctttcgagcttttatactttggccctgttagtgttcaccatttcaagaaaaatgcaccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttcgagcttttatactttggccctgttagtgttcaccatttcaagaaaaatgcaccat 443

                                                                       
Query: 245 agaacttctatccattttgggaaggtaattcttatgttattatttaaattaactagcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaacttctatccattttgggaaggtaattcttatgttattatttaaattaactagcaat 503

                           
Query: 305 gatattttgaagcata 320
           ||||||||||||||||
Sbjct: 504 gatattttgaagcata 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)