BAC Information

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BAC

Clone NameMSMg01-322P06
Chromosome11 (Build37)
Map Location 68,491,395 - 68,491,685
singlet/doubletsinglet
Overlap genenone
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Downstream geneMyh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322P06.T7 (MSMg01no322_p06.b1)MSMg01-322P06.TJ (MSMg01no322_p06.g1)
ACCAG441508AG441509
length707733
length of high quality
(start - end)
288 (52 - 339)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no322_p06.b1 PHD_FILE: MSMg01no322_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:01 2005CHROMAT_FILE: MSMg01no322_p06.g1 PHD_FILE: MSMg01no322_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTAAATTCGAGAGAAGGCGCGGAATTCTACCTATTTTCAGAGGATAG
CTACCAAAAAGTTCTCTCTAGATGCAAGTACATCTCTGTGAGTTTGAGGC
CAGTCTGGTCTGTTTACTAAATTTCAGGACAGGTAGGACTACCTAGAGAG
ATCCTGTCTCAGAAAAACCACCACCACCCAAAACCAGTTCTCCTTAGAAA
GTCTCGATAGCAGTCTGATCCAACGTGACCGTTTCTATCTCATAATTTCT
AAAGCAGTGCATCTTCAGGTTTCTGGTAAAATTGCTAATCGCATGATTAG
AGTTATGGAGTCTGTGATCTGCCGTTCCCTCTCCAAACAGGTATGGCTGA
CCGCGACGTTGATTTGGCGGGAAAGGCTTATGGGTTCAGGTCAAATTCGT
GCCCTGGTCTCTTTGTTGAGACACTGTCCTTCCTGTTTCTGATATTCAGC
TTAAGAGTAGATGTGATGCTCTCTAACCTATGGTCATCTTAGAGGGGAAA
CTTAGCCTCTGCTAGAGCACCTCACAGATGTTGCATCCACTGTAGGTTTT
CCAGAAATGTCTGCTTGTGCTTAGTCAAGTTCAACTGGGTAGAAGAGTGT
TGTAGTTTCATGTTTAATAACCCACGAGTTTAACCCACCATCTGTTACCT
GAAGTCTCCCTCTGCTCAAATTGGTTTTTCTTTTCTTTAAAAATACGTTC
GAGATTT
CCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTCAAAATTCTTTGTGTTTCCTTAAACATTTTCT
CTAAAGTAGCTGCGTCAGAATCCCCCAACAAAATATCGTCCATATAATGA
CAAATAATGGATTGAGGAAATTGCCTATGAAGTATTTCTAACAGTTTTTG
TACAAAATCTTGATATAATGTTTAACATTTCCTGTGGAAGAACTTTTCAC
TGACATCTTTTTGCAGGTTGAGCATTATTATACGGAGGTACTGTGAAAGC
AAACCTTTCCCTATCCCGCTCGTGTTAGGGGATAGTAAAAATGCAGTCTT
TTAAATCAGTTACTATCTTGTGTCACACCTTACCCAATAAGGAAGGTAAA
GGAATTCTAGGCTGTAACACACCAATTGGTTGAATTACTCAATTCACCAC
TATTAAATCTGTTAACATTCTCTATTTCTCCAATTTCTTTTTTTTAATAA
ATATGGGGGTGGGATTTCCCTCTTCTATAGGCTGAGCCTCAAGTTGCTCT
TGTACCAGATGCTCAAGTGCCTGTGATTTTTCCTTAGTTAAGTTCATTGC
TCTATCCACACAGGGTTGTCAGTCAACCATTTTAAGAGTAAGGCCAGTGC
CCCCACCCCTTTATAAATCAATCACTATTATGTTCTGTGTTTGGACAACT
GATGCACCCTGTGTTATTCTTGACGAATTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_p06.b1 MSMg01no322_p06.b1 CHROMAT_FILE:
MSMg01no322_p06.b1 PHD_FILE: MSMg01no322_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:01 2005
         (288 letters)



>mm_chr11_68491078_68491768
          Length = 691

 Score =  516 bits (267), Expect = e-151
 Identities = 284/291 (97%), Gaps = 3/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taccaaaaagttctctctagatgcaagtacatctctgtgagtttgaggccagtctggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taccaaaaagttctctctagatgcaagtacatctctgtgagtttgaggccagtctggtct 549

                                                                       
Query: 61  gtttactaaatttcaggacaggtaggactacctagagagatcctgtctcagaaaaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtttactaaatttcaggacaggtaggactacctagagagatcctgtctcagaaaaaccac 489

                                                                       
Query: 121 caccacccaaaaccagttctccttagaaagtctcgatagcagtctgatccaacgtgaccg 180
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 caccaccaaaaaccagttttccttagaaagtctcgatagcagtctgatccaacgtgaccg 429

                                                                       
Query: 181 tttctatc---tcataatttctaaagcagtgcatcttcaggtttctggtaaaattgctaa 237
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttctatctcatcataatttctaaagcagtgcatcttcaggtttctggtaaaattgctaa 369

                                                              
Query: 238 tcgcatgattagagttatggagtctgtgatctgccgttccctctccaaaca 288
           ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 368 tcgcatgataagagttatggagtctgtgatctgcccttccctctccaaaca 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 691
Length adjustment: 9
Effective length of query: 279
Effective length of database: 682
Effective search space:   190278
Effective search space used:   190278
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)