Query= MSMg01no323_a09.b1 MSMg01no323_a09.b1 CHROMAT_FILE:
MSMg01no323_a09.b1 PHD_FILE: MSMg01no323_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:07 2005
(637 letters)
>mm_chr11_61950991_61952027
Length = 1037
Score = 880 bits (455), Expect = 0.0
Identities = 544/597 (91%), Gaps = 47/597 (7%)
Strand = Plus / Minus
Query: 87 tattt--tttttcagaatttcattttattctccatagagagag------agaaagggaga 138
||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1037 tattttgtttttcagaatttcattttattctccatagagagagagagaaagaaagggaga 978
Query: 139 gagggaaaaagggagggagggagagagaaaggagagaga-----------------agag 181
|||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct: 977 gaggaaaaaagggagggagggagagagagaggagagagagaagagagaagaaagagagag 918
Query: 182 agaagagagaaa--agagaaaagagag-----agagag-aatga-------agagagaag 226
|||||||||||| ||||||||||||| |||||| || || |||||||||
Sbjct: 917 agaagagagaaaagagagaaaagagagagagaagagagaaaagagagagagagagagaag 858
Query: 227 --agaga-agagagaga--gcactgaattttctgagaaaaaagagggaaatacttttgac 281
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaagagagagagagagagcgcactgaattttctgagaaaaaagagggaaatacttttgac 798
Query: 282 tgtgtgatcgtgcagtgagctgattccaagatgaaggacgaaactagagaaactttggtt 341
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 797 tgtgtgatcgtgcagtgagctgattccaagatgaaggaggaaactagagaaactttggtt 738
Query: 342 gtgatgactgtgtgggacagggaatggcataggagacaagtgagctctttacacagtggt 401
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 737 gtgatgactgtgtgggacagggaatggcataggagacaagtgagcgctttacacagtggt 678
Query: 402 aatctcctctacagagtccccctttcatatagaaatggcagtagtttccaatcatggcaa 461
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aatctcctttacagagtccccctttcatatagaaatggcagtagtttccaatcatggcaa 618
Query: 462 gggctgggctctctttcttccaccaaatgctctgctagctgacagagaccatggagctgt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggctgggctctctttcttccaccaaatgctctgctagctgacagagaccatggagctgt 558
Query: 522 gaagatagaaatgggagggaaggctggtaaaggagttatataagccaatgggatctttgc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaagatagaaatgggagggaaggctggtaaaggagttatataagccaatgggatctttgc 498
Query: 582 ttataaacacaagtgctaccagcttatctgcctcaca-ggaggagctaatacccaca 637
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 497 ttataaacacaagt-ctaccagcttatctgcctcacagggaggagctaatacccaca 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_a09.g1 MSMg01no323_a09.g1 CHROMAT_FILE:
MSMg01no323_a09.g1 PHD_FILE: MSMg01no323_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:07 2005
(327 letters)
>mm_chr11_61770116_61770842
Length = 727
Score = 555 bits (287), Expect = e-162
Identities = 316/327 (96%)
Strand = Plus / Plus
Query: 1 catccgggagctaggaaagccacggnagctgcgggctgcggcggcgcgggagnccggggc 60
|||||| |||||||||||||| ||| ||||||||||||| |||||||||||| |||| ||
Sbjct: 201 catccgtgagctaggaaagccgcggtagctgcgggctgcagcggcgcgggagtccggtgc 260
Query: 61 gagagaaccacggcaggngagttggggnacgggatgctcggccctctgtttctcagctgc 120
||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 261 gagagaaccacggcaggtgagttggggtacgggatgctcggtcctctgtttctcagctgc 320
Query: 121 cttttctcaagtctggcgaacaagacgaggtgcaggagtcctggctcggggacgtggggt 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cttttctcaagtctggcgaacaagacggggtgcaggagtcctggctcggggacgtggggt 380
Query: 181 gcccttctggaaagacgcgctgcggtcctggatacccaggcggcgggcagcgcagggacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccttctggaaagacgcgctgcggtcctggatacccaggcggcgggcagcgcagggacc 440
Query: 241 gcgctgcaggtggggaccgcaggtggccggccctcccctccggccgcaggtttggcgcag 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gcgctgcaggtggggaccgcaggtggccggccctcccctccggccgcgggtttggcgcag 500
Query: 301 cagcctggcacggggaccaggtggctc 327
|||||||||||||||||||||||||||
Sbjct: 501 cagcctggcacggggaccaggtggctc 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
