BAC Information

Click to search

BAC

Clone NameMSMg01-323G13
Chromosome11 (Build37)
Map Location 56,228,471 - 56,228,900
singlet/doubletsinglet
Overlap genenone
Upstream geneSparc, Atox1, G3bp, Glra1, Nmur2, LOC100040816
Downstream geneLOC624168, Gria1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323G13.T7 (MSMg01no323_g13.b1)MSMg01-323G13.TJ (MSMg01no323_g13.g1)
ACCAG441838AG441839
length1,1851,183
length of high quality
(start - end)
615 (128 - 742)692 (135 - 826)
definitionCHROMAT_FILE: MSMg01no323_g13.b1 PHD_FILE: MSMg01no323_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:55 2005CHROMAT_FILE: MSMg01no323_g13.g1 PHD_FILE: MSMg01no323_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCTTTNNNNNCCATTGGGCGTATAGACTCCTATGGGAGAGGATCC
GCGGAATTCTTTGTTACCTCTGCCTTTAAGTTTTATGGGGTTATTTGATT
TTCTGGAGTCCCTATTATTGAGTCCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAATGATCCTTTCCCAATCTATTGGTGGTCT
TTTTGTCTTACTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTTGATCTTACAGTACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGGTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTATTCAATTCTATTCCATTGG
TCTACTGGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTT
TATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATG
AATTTGCAAATTGCTCCTTCTAATTCGTTGAAGAATTGAGTTGGAATTTT
GATGGGGATTGCATTGAATCTGTANATTGCTTTTTGCAAGATAGCCATTT
TTACCATGTTGATCCTGCCCATCCATGAGCATGGGAGATTTTTCCTTCTT
CTGAGAAATCTTTAATTTTTTTTTTCCAAAAATTGAATTTTTTTTTTTAA
GAACTTTTTCCTTTTTTAATTAAAGCCCGCCCCAGAAATTTTTTTTTATT
TTTTACTATTTTGAAGGGGGGGGGTTTCCTCTAATTTTTTCTTTTCCCGT
TTTCTTTTTTTTTAAAAAAAAAAATTTACTGGTTGTGATTTTTTTTTTCT
CCTTCCCTCTTCCACCCATTTTATAATTTAAGAAATCCTGTGGAATATTT
TTAGTCTTCTTTTTAAACTATTTTCCTTTCAAATT
NNCGCGCTATTTTNNNACAGAAGTGAGGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTCCAGCTCTAGAAG
TATGTGGTTCTAAATTTACCTGATCTCCTTGACATATTTCATGTAAGTAA
TTCAGACACATTTATGAAATAAATATCTCTCACTCAATGAAGTGATCTCT
TGTGTGCATAAAATGATGCCATTTATGGGGCCCCTTTCCGCTCAAGTCCA
TACTCTTAATATAATAGAAGTAGAGAAAATGAGTTTGTGGTTCCAAGGAC
AAGCTTAAAAAGTGTCAAGGCAGAAACAGTAACAAGGTTAGTATCATAAG
ATGCTTTATATACCTGCACTGGCTGGTTTTGTGTGTCATCTTGACACAAG
CTGTTAGTTATCACAGAGAAAGGAGCCTCCCTTGAGGAAAAGGCATTTTC
TCATTAGTGATCAAGGGGGAAGGACCCAGTCCAATGTAGGTGGTGCCTGG
GATAGTGGTCCTGGGCTCTATAAGAAAGCAAGCTGAGCATGTCATGGGAA
GCAGTCCAGTAAGCAGCACTCCTCCATGGCCTCTGCATTAGTTTCTGCCT
CCAAGTTTCTGCCCTGTGCTAGTTCCTGTCCTGACTTCCTTTGGTGATGA
ACAGAAATTTGGATATGTAAGCTGAATAAACCTTCCTCCCCAACTTTCTT
CTTTGTTATGATATTTGTACAGGAATACAAACCCTGACTAAGACAAATTG
GTACCAGCAGTGGGGTACTTCTGTAATGGCCTGATCATGTTTTTAGAGGA
CTGTGGAAGGACTTTGGAACTTTGAGCTACAAGAGTCATTGGGGTGTTAA
GAGCTCTGTNGGATATTCTGTGGAAGCTTGAAAGATACTGTTGAGAACAG
TGCAAAAGAAGGAGGCCGGGCTTGGAAATTTCCAAAGGAATGTTTAAGAT
TCCTATTAAGGGCCTTGGTGTTTTTATTAAAAAAAATCTTGGTTCCTGCT
TACCGGGGGTAAAAAAAACACCTGGGTTTATCAAATACCCCAAATACTTT
AAGCAACCCTTTTGTTTTATGGGAAAAATTATATCTGGCTTAATTGAACT
TAAAAAATAAAAAGGGGTTATAAAAAAAAAGCATCCCTACTGGGAAATCT
TTTTTAAAGGTTTCTTTGAAAAATAAAAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_g13.g1 MSMg01no323_g13.g1 CHROMAT_FILE:
MSMg01no323_g13.g1 PHD_FILE: MSMg01no323_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:55 2005
         (692 letters)



>mm_chr11_56228471_56229562
          Length = 1092

 Score =  758 bits (392), Expect = 0.0
 Identities = 422/432 (97%), Gaps = 3/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttcatgtaagtaattcagacacatttatgaaataaatatctctcactcaatgaagtg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 430 tatttcatgtaagtaattcagacacatttatgaagtaaatatctctcactcaatgaagtg 371

                                                                       
Query: 61  atctcttgtgtgcataaaatgatgccatttatggggcccctttccgctcaagtccatact 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atctcttgtgtgcgtaaaatgatgccatttatggggcccctttccgctcaagtccatact 311

                                                                       
Query: 121 cttaatataatagaagtagagaaaatgagtttgtggttccaaggacaagcttaaaaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cttaatataatagaagtagagaaaatgagtttgtggttccaaggacaagcttaaaaagtg 251

                                                                       
Query: 181 tcaaggcagaaacagtaacaaggttagtatcataagatgctttatatacctgcactggct 240
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 250 tcaaggcagaaacagtaacaaggttagtgtcataagctgctttatatacctgcactggct 191

                                                                       
Query: 241 ggttttgtgtgtcatcttgacacaagctgttagttatcacagagaaaggagcctcccttg 300
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 190 ggttttgtgtgtcatcttgacacaagctg-gagttatcacagagaaaggagcctcccttg 132

                                                                       
Query: 301 aggaaaaggcattttctcattagtgatcaag-ggggaaggacccagtccaatgtaggtgg 359
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 131 aggaaaaggcattttctcattagtgatcaagcgggg-aggacccagtccaatgtaggtgg 73

                                                                       
Query: 360 tgcctgggatagtggtcctgggctctataagaaagcaagctgagcatgtcatgggaagca 419
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 72  tgcctgggatagtggtcctgggctctataagaaagcaagctgagcaggtcatgggaagca 13

                       
Query: 420 gtccagtaagca 431
            |||||||||||
Sbjct: 12  atccagtaagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)