BAC Information

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BAC

Clone NameMSMg01-323K18
Chromosome11 (Build37)
Map Location 45,494,028 - 45,494,681
singlet/doubletsinglet
Overlap genenone
Upstream geneEbf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323K18.T7 (MSMg01no323_k18.b1)MSMg01-323K18.TJ (MSMg01no323_k18.g1)
ACCAG442027AG442028
length1,1161,229
length of high quality
(start - end)
708 (133 - 840)650 (137 - 786)
definitionCHROMAT_FILE: MSMg01no323_k18.b1 PHD_FILE: MSMg01no323_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:29 2005CHROMAT_FILE: MSMg01no323_k18.g1 PHD_FILE: MSMg01no323_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAGATCNNNNNNNGGTCACTGGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACCTGAGGAATACCCAATGAGTGACCAGCACCTG
AAAAAATGTTCAGCATCCTTCTTCATAAGAGAAATGCAAATCAAAACAAC
CCTGAGATTCCATCTCACACCAGTCAGAATGGCTTCGATCAAAAATTCAG
GTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTTCAT
TGTTGGTGGGAGTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCAGAGGACTCAACAATACCAC
TTCTGAGCATATATCCAGAAGATGTCCCAAATGGTAAGAAGGACACATGC
TCCATTATGTTCATAGCAGTCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCTCCTCAACAGAGGAATGGATACAAAAAATGCGGTACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAATGAGGTAACACA
ATCACAAAAGAACTCAAATGATATGCACTCACTGATAAGTGGATATTAGT
CCAAAAACTTAGTATATCTGAGATATAAGAGATAATTTGTAAAACACATG
AAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAG
AATTGGAAACAATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGC
TGAGACAAACGGATGGACCATCTAGAGACTGCCATATCCAGGGTTCCATC
CCATAATTAGCCTCCAAACGATGTCACCATTGCATACACTAGCCAGTGTT
TGCTGAAAGGACCCTGATATAGCTGTCTTCTTTGAGACTATGCCGGGGCC
TAGCAAACACTTAAGTGGAAGTTCACAGTCAGCTATTGGAGGGAACCCAA
GGCCCCCCATGGTAGAAGGTAGAAAAAGATACCCGGGAGCTTAAGAAAAT
CTTGCACCCCGGTAGGGGCACAACAAAATTTAAATAACCCGGACCCCCCA
AGCTTTTTTATTTTTT
NNCCATTTANNNNNNNGTCGATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGCCCGCCCTTTTAGN
TCTATTACATTATGAACATTCTTATAATCCTACTTTATTCTTCCAACATA
GGAAATGGTAGGAAAACAATATCATATAGTCCATTTACCAATAAAAAAAG
AAGGCTAGAGTGTCTAACCTTCTCAGCCAGTATCATATGTAAGGAAAGGG
TGGAGGCGGAATTTAAGTCCAATTTTTCCTGACTCCAAATGTCATCTCCC
TAATTACCATTCCATCCTTCCTTTCCATCCTTTAATATACTAACTGAGAA
GACGTGAGGTCACCAAAGCCCTGGATTTCTGTTCCTGTGTGGGTGGGTGA
GCCAAACCACTGTTTTTGTGGGAAGAAACCAGAGAAGCCTTTGCCTTCTG
CAATCTATTTATCTTTTCCCACACAGCGGAGTTCTGCAGAATCCTAATAC
CAAGGCTTTGCTAATAAACGCCAGCAGATGTACAGATTTAGCTTACGCTT
TGCTAGACTAGAGCCTCTGAGAAACGTTCTGGTCTCAAACACCTAGAAGG
ACATAGGTGCATGGTTCATCTTCAAGCTGCGATGGATGGTACACGTGGAG
CCACCTGAGCCTCTTCTTTGCATTGTGGGTACTCAATGTGGATTTCATTC
AGCACTTATAGGTCATTCACTCAACTCCAGGCACTGTTTAAAGTGCCTCA
GATATACTGGGTTTTCTTGCCTAATCCTCTCAAGTGACCCCACAGGGTAG
ATGTCCAAGCACAGCAAGATGAAGTCACAGTGTCACACAGGTGGCCACTA
GAACTTCTAAGATTTGAACCCCAACTTGCTTCGTCACGGAACGTAAACGT
GTTATCTGCTAAGGATCCCAGCCACCACTGGCAAGTCATACTTTGTTGAG
TGACGCTTAACTCTTCCTCGGCTTGAAAAACATAAAACATATATGACCTC
TGCCTAAAGGGGAACCTTTCAGCCCCTAAATTTGGAAAGAATCTGGTTTT
GTAGTAGCTGGACGGCCCTTATTGAAGGGAAAAGATCCCTTTTCCTGACC
TGGAACCCCTTAAGTTGGAAATTTGGCCGGCCCCCCCCGGCGAAAGGTAA
TTTCTTTTCTTATTTTGGGGAAAAAAAAATATTTTTTGTGAGGGGGGGGC
CTCTCTCCTCGGGGATATGGGGGAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_k18.g1 MSMg01no323_k18.g1 CHROMAT_FILE:
MSMg01no323_k18.g1 PHD_FILE: MSMg01no323_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:29 2005
         (650 letters)



>mm_chr11_45493675_45494724
          Length = 1050

 Score = 1145 bits (592), Expect = 0.0
 Identities = 637/658 (96%), Gaps = 12/658 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    attcttccaacataggaaatggtaggaaaacaatatcatatagtccatttaccaat---- 56
            ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
Sbjct: 1007 attcttccaacataggagatggtaggaaaacaatatcatatagtccatttatcaataata 948

                                                                        
Query: 57   aaaaaaagaaggctagagtgtctaaccttctcagccagtatcatatgtaaggaaagggtg 116
            |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  aaaaaaagaaggctagaaagtctaaccttctcagccagtatcatatgtaaggaaagggtg 888

                                                                        
Query: 117  gaggcggaatttaagtccaatttttcctgactccaaatgtcatctccctaattaccattc 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  gaggcggaatttaagtccaatttttcctgactccaaatgtcatctccctaattaccattc 828

                                                                        
Query: 177  catccttcctttccatcctttaatatactaactgagaagacgtgaggtcaccaaagccct 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  catccttcctttccatcctttaatatactaactgagaagacgtgaggtcaccaaagccct 768

                                                                        
Query: 237  ggatttctgttcctgtgtgggtgggtgagccaaaccactg----tttttgtgggaagaaa 292
            ||||||||||||||||||||||||||||||||||||||||        ||||||||||||
Sbjct: 767  ggatttctgttcctgtgtgggtgggtgagccaaaccactgggaa----tgtgggaagaaa 712

                                                                        
Query: 293  ccagagaagcctttgccttctgcaatctatttatcttttcccacacagcggagttctgca 352
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 711  ccagagaagcctttgccttctgcaatctatttatcttttcccacacagtggagttctgca 652

                                                                        
Query: 353  gaatcctaataccaaggctttgctaataaacgccagcagatgtacagatttagcttacgc 412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  gaatcctaataccaaggctttgctaataaacgccagcagatgtacagatttagcttacgc 592

                                                                        
Query: 413  tttgctagactagagcctctgagaaacgttctggtctcaaacacctagaaggacataggt 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 591  tttgctagactagagcctctgagaaacgttctggtctcaaacacctagaaggagataggt 532

                                                                        
Query: 473  gcatggttcatcttcaagctgcgatggatggtacacgtggagccacctgagcctcttctt 532
            ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 531  gcatgattcatcttcaagctgcgatggatggtacacatggagccacctgagcctcttctt 472

                                                                        
Query: 533  tgcattgtgggtactcaatgtggatttcattcagcacttataggtcattcactcaactcc 592
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  tgtattgtgggtactcaatgtggatttcattcagcacttataggtcattcactcaactcc 412

                                                                      
Query: 593  aggcactgtttaaagtgcctcagatatactgggttttcttgcctaatcctctcaagtg 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411  aggcactgtttaaagtgcctcagatatactgggttttcttgcctaatcctctcaagtg 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)