BAC Information

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BAC

Clone NameMSMg01-323P17
Chromosome11 (Build37)
Map Location 7,654,153 - 7,654,764
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323P17.T7 (MSMg01no323_p17.b1)MSMg01-323P17.TJ (MSMg01no323_p17.g1)
ACCAG442251AG442252
length1,2871,276
length of high quality
(start - end)
617 (136 - 752)687 (138 - 824)
definitionCHROMAT_FILE: MSMg01no323_p17.b1 PHD_FILE: MSMg01no323_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:09 2005CHROMAT_FILE: MSMg01no323_p17.g1 PHD_FILE: MSMg01no323_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCGACTCTTNNNNNNAACACTGGGCGCANTAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCTATGGACAGTTCCAGCCGCTATAGAGCCCATAAGGAAC
AAAGACTCCTGCAGGGAGTGCATCATTACTACTCACTGTCAGTGTAGGCT
GACCGGTTCTCTCAGATGCCTCTTGCCACACTTCTTTGAAACTTGCTAAG
AGAGGCATGCAGTCAACCTCCATTCAGCAGGAGGATTACTGCTGTCCCCT
GGAAAGCACTAGTCCCATATTGCCTGTTCCAAGAACCTGGAGCACAGCCA
AGCAAGGAGGTCCAGGCCAAGCAACAGAAAGTTCATCTGAATTATCTCCT
GTTCTGCATTTCCTGGTTCCTCTCTCACTTCTTCCTCTTCACCTCAGACT
CATTGCCCCTCCTATCTTTGTTCTGCCCAGCTAATGACCACTCCCTGGAA
CCAATGACACCTTAAGCTGGGCTTACGTTGGATAGCTCTAATTGCCATTG
CCTGAGCTGTGAAAATGGTCCCTTGCTCATGTGTAGGGTAGGTGGTGTCC
TATTCCACATCTCCTGTAGGAAGTGAACCCAAGTCAGGAAGCATTTACCG
AATGCCAAGCAGATGTGAGTTCTCTGTTCTTTTCAGATGGGACAGAAACA
ATGAACAATGCCCCAGGGCCCTGAAGGGAGGTATTGAGAGGCAGCATTAC
TGCCTCCTGAAGAAGGCCAATGCAGAGGCACCATTAAAGCTTAGTGAATG
ANGGCTCCTACCTGAGGTGACTAACACAAAAGACAAGAGTGCTATTTGAA
AAAGAAGGGTGGGTGGCCCCAGGAAGGTAACCAGAGAAAATGGCGCGAAG
GCAGCGAGCAAAATTGCCCATAGATATAGAGACCCCATTGCGGGGGAGGT
GTGACTAAAGATGACCCACACAGATTCTCATCTGAACTGTCCAAGTGAAA
AATGAAAGGTTGATCCATAGTATTGTATGCCTGAATGAACCCATGAATGA
ATGAGGGAATGAATGATGGAATTAAATGATGGAATCTCCCCCTGGAAGGG
GATTAGATTCTAAATCAGGAAAATTCCCCCCTTTGGGAAAATTCCCCCCC
CCAAAAGATTTTTAAATTTTTTGGACCATTTCTCAAAAAAATAAAGGGCC
AAAAAAAAAAACTTTTAAGNTTTAATTATTATTTCTTCCCAAAAATATTT
TTGCGCCCAAAACACCAGCGCCTTTTTGGTTAAAAAAATATTACTCACAA
AAATGGGTTTTTCCTCTTTTTATAAAAAATATTTTTT
NCCATCCCTNNNNNNAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAAGTCACGAAACTCGAAT
GGCTGAGAAGCACCTAAACATATGTTCACCATCCTCAGTCATCAGGGAAG
TGGAAGCCAAAATGACTCTAAGATTCCACCTCACACCAGTAAGAATGGCT
AAGATAAAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCTTCCATTGCTGGTGGGATTGCAAGCTGGTACAATCACTC
TGGAATTCAGTCTGGCAACTTCTCAGAAAATTGGACTTAGTACTACCTGA
GAACCCAGCTACACTACTCCTGGGCTTATACCCAGAAGATGCTCCAAAAT
GTAGTAAAGATCTTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGTACACAGATGTTCCTCAACAGAGGAACGGATACA
GAAAATGTAGTATATTTACACAAGAAGTACTACTCAGCTCTTAAAAACAA
TGACTTCACAAAATTCGCAGGCAAATTGATGGATCTAGAAAATATCATTC
TGAGTGAGGTAACTCAGTCACAAAAGACCAGACATAGTATGTACTCACTG
ATAAGTGGATATTAGGCAAAAAGTGAAGAATACCTAAGATGAACCACATG
AACCACATGAAGTCAAGAGGAAGGAAGACCAAAGAGTGGATGCTTCAGTC
CTACTTAGAAGGGGGAACAATATAAGGGAAGTCCAAGGCTCTAGCTCTTG
CTCCTTTGCCTGCTTGCTGCGTGAGACTGAGTAACTGCTAGATCCTTGGA
CTTCCGTTCACAGCTGCAACTGAACAAATGTTGGNAATTGGGCTGCCGAC
TGTAAGTCATCAATAAATTCCTTTACTATCTAAAGACTGTCCATAAGTTC
TGTGACTCTAGAAAAACCTTGACTATTACAAAGTTGTTATTAAGGAAATT
AAAGGGTTNAAGGAACTTGGGAGGAAAAAAAGAAAAAAGGAAGAAAAGAG
TGGCAAAATTGGGTTTGGGAAAAAATTGGAGGGAAATGTCCCCAAGGTCC
CGTAAATTTCTACAAAGCTGCGTTCTAAATGCGCAAGTGGACATTTTTTC
TCCTTCCTACACCTTTCCCCGACCTCCAAATCTTCATCCTACCCAAATTC
AACTTCAATCTCATCACCATTTCACTTTACACTATATATAAGATCATCTA
TTAGACTACATCTCATTCTATTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_p17.b1 MSMg01no323_p17.b1 CHROMAT_FILE:
MSMg01no323_p17.b1 PHD_FILE: MSMg01no323_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:09 2005
         (617 letters)



>mm_chr11_7653953_7654974
          Length = 1022

 Score = 1040 bits (538), Expect = 0.0
 Identities = 592/612 (96%), Gaps = 5/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtcagtgtaggctgaccggttctctcagatgcctcttgccacacttctttgaaacttg 60
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtcagtgtaggcttaccggctctctcagatgcctcttgccacacttctttgaaacttg 260

                                                                       
Query: 61  ctaagagaggcatgcagtcaacctccattcagcaggaggattactgctgtcccctggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagagaggcatgcagtcaacctccattcagcaggaggattactgctgtcccctggaaa 320

                                                                       
Query: 121 gcactagtcccatattgcctgttccaagaacctggagcacagccaagcaaggaggtccag 180
           ||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gcactagtttcatattgcctgttccaagaacctggagcacaaccaagcaaggaggtccag 380

                                                                       
Query: 181 gccaagcaacagaaagttcatctgaattatctcctgttctgcatttcctggtt----cct 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 381 gccaagcaacagaaagttcatctgaattatctcctgttctgcatttcctggttggttcct 440

                                                                       
Query: 237 ctctcacttcttcctcttcacctcagactcattgcccctcctatctttgttctgcccagc 296
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ctctcacttcttcctcttcacctcagactcattgcccctcctagctttgttctgcccagc 500

                                                                       
Query: 297 taatgaccactccctggaaccaatgacaccttaagctgggcttacgttggatagctctaa 356
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 taatgacaactccctggaaccaatgacaccttaagctgggcttaggttggatagctctaa 560

                                                                       
Query: 357 ttgccattgcctgagctgtgaaaatggtcccttgctcatgtgtagggtaggtggtgtcct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgccattgcctgagctgtgaaaatggtcccttgctcatgtgtagggtaggtggtgtcct 620

                                                                       
Query: 417 attccacatctcctgtagg-aagtgaacccaagtcaggaagcatttaccgaatgccaagc 475
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct: 621 attccacatctcctgtagggaagtgaacccaagtcaggaagcatttactgaataccaagc 680

                                                                       
Query: 476 agatgtgagttctctgttcttttcagatgggacagaaacaatgaacaatgccccagggcc 535
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 681 agatgtgagttctctgttcttttcagaggggacagaaacaatgaagaatgccccagggcc 740

                                                                       
Query: 536 ctgaagggaggtattgagaggcagcattactgcctcctgaagaaggccaatgcagaggca 595
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 741 ctgaagggaggtattgagaggcagtattactgcatcctgaagaaggccaatgcagaggca 800

                       
Query: 596 ccattaaagctt 607
           || |||||||||
Sbjct: 801 ccgttaaagctt 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1022
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1012
Effective search space:   614284
Effective search space used:   614284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)