Query= MSMg01no325_c20.b1 MSMg01no325_c20.b1 CHROMAT_FILE:
MSMg01no325_c20.b1 PHD_FILE: MSMg01no325_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:39 2005
(574 letters)
>mm_chr11_100649616_100650589
Length = 974
Score = 1013 bits (524), Expect = 0.0
Identities = 545/552 (98%)
Strand = Plus / Minus
Query: 22 ggccactgagtcttatttattttattgtattattttgtatgtgggtgttttgcccccatg 81
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 ggcctctgagtcttatttattttattgtattattttgtatgtgggtgttttgcccccatg 915
Query: 82 tttctctgtgtaccacatgtatgcagtgccctagaactggaattatggatggtcatgaac 141
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 914 tttctctgtgtaccacatgtatgcagtgccctagaactggagttatggatggtcgtgaac 855
Query: 142 catcatgtgggtgctggggattgaaccccagtctgctgcaagaacaagtgctcttaactg 201
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 catcatgtggatgctggggattgaaccccagtctgctgcaagaacaagtgctcttaactg 795
Query: 202 ctgagccatctctctagctccagggctgttgcttttagacactgggaggactccacttga 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctgagccatctctctagctccagggctgttgcttttagacactgggaggactccacttga 735
Query: 262 acttgagcccactgaggtcgctgggtttctagggaaatgacgtagcatcacatatgccaa 321
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 734 acttgagcccactgaggtcgctgggtctctagggaaatgacttagcatcacatatgccaa 675
Query: 322 ggccactgagtcttgtgtgcctcctgggtgacgtctagacttaaagttaattcagaacaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggccactgagtcttgtgtgcctcctgggtgacgtctagacttaaagttaattcagaacaa 615
Query: 382 gacaacccttcgcaggctgcatgtggaaggtgtttgtataaagcccaggacaagtgtccc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gacaacccttcgcaggctgcatgtggaaggtgtttgtataaagcccaggacaagtgtccc 555
Query: 442 ttacagccaactctgaagtgcctctgccatatgcagctgatattctaatgctcattgtgg 501
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttacagccaactctgaagtgcttctgccatatgcagctgatattctaatgctcattgtgg 495
Query: 502 ctctcttcccgttcactctcatgtccccaaccaggagaatttgccaggacggaattacac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctctcttcccgttcactctcatgtccccaaccaggagaatttgccaggacggaattacac 435
Query: 562 tttctggcagtg 573
||||||||||||
Sbjct: 434 tttctggcagtg 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_c20.g1 MSMg01no325_c20.g1 CHROMAT_FILE:
MSMg01no325_c20.g1 PHD_FILE: MSMg01no325_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:39 2005
(646 letters)
>mm_chr11_100593627_100594672
Length = 1046
Score = 1120 bits (579), Expect = 0.0
Identities = 625/647 (96%), Gaps = 13/647 (2%)
Strand = Plus / Plus
Query: 1 taactccagaacatctagtgcttaagaccaatgtcaccctgtgtaaaactagcacccacc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 taactccagaacatctagtgcttaagaccaatgtcaccctgtgcaaaactagcacccacc 260
Query: 61 gaccagagtcaaactcacttcgctaagtgctgcctgggtggatactgtctcatcacacac 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gaccagagtcaaactcacttcgctaagtgctgcctgggtgggtactgtctcatcacacac 320
Query: 121 aagtgcagaaagtacagactattctgtcctgctatcagatttactcactctgtagaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgcagaaagtacagactattctgtcctgctatcagatttactcactctgtagaagca 380
Query: 181 gatggggtgggggcactctgtagccagccagagacatgtccaccttctcatactaaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatggggtgggggcactctgtagccagccagagacatgtccaccttctcatactaaaatc 440
Query: 241 ctcacaggaaattgagatttgaagagctctatcctctggaaatttgtttgtagcctgcct 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcacaggaaattgagatttggagagctctatcctctggaaatttgtttgtagcctgcct 500
Query: 301 ggcttgcattatctgtctggtatcaactactctacttacctgtatgctctggtgtccatg 360
|||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ggcttgca-----------gtatcaactactctacttacctgtatgctctggtgtctatg 549
Query: 361 tctgagcagctgaagagagggctcaggctagcaatgagctggggctaggttcagatccca 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tttgagcagctgaagagagggctcaggctagcaatgagctggggctaggttcagatccca 609
Query: 421 gctttaactagggagagtgttaaggaggccggcaggcaggtacttttaggcagggttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gctttaactagggagagtgttaaggaggccggcaggcaggtacttttaggcagggttcca 669
Query: 481 tgtccctgcgttttc-tttaacagctgcaatgagggacctacaacatgaccatatctgtg 539
||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 670 tgtccctgc-ttttcctttagcagcttcaatgagggacctacaacatgaccatatctgtg 728
Query: 540 gcctgaggtgctcatctagctgagatagaactagcagggagccagcattgagaagcaaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gcctgaggtgctcatctagctgagatagaactagcagggagccagcattgagaagcaaga 788
Query: 600 tcatgtagagacaaaaacaggagcaagtatctcctcaggctaatgag 646
||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 789 tcatgtagagacaaagacaggagccagtatctcctcaggctaatgag 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
