Query= MSMg01no326_b13.b1 MSMg01no326_b13.b1 CHROMAT_FILE:
MSMg01no326_b13.b1 PHD_FILE: MSMg01no326_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:44 2005
(548 letters)
>mm_chr11_108765578_108766525
Length = 948
Score = 893 bits (462), Expect = 0.0
Identities = 525/546 (96%), Gaps = 4/546 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagggatattccgtaaggggttgcccaagaaaatcacacacacttccccggtag 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggaattcagggatagtctgtaaggggttgcccaagaaaatcacacacacttccccggtag 688
Query: 64 tgtggaggaatgttacaatgattagaaaaatagtggagttgtaatggaggaaatgccctg 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 687 tgtggaggaatgttacaatgattagaaaaatagtagagttgtaatggaggaaatgccctg 628
Query: 124 agatgtactccacactgcaggatgcaaatgattataaccgctgtctaccaaaccaagtga 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 627 agatgtactccacactgcaggatgcaaatgattataactgctgtctaccaaaccaagtga 568
Query: 184 aatatatagaaataagggtccagtggtgctttgactgttcttggtttttaatatttgtct 243
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
Sbjct: 567 aatatatagaaataagggtccagtggtgctttgacttttcttggttttta-tatttgttt 509
Query: 244 tggcatgcttctggagagctaagggctacactttgcctgtggtccacccctgttcagatt 303
|||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 508 tggcatgcttctggagagataagggctacattttgtctgtggtccacccctgttcagatt 449
Query: 304 caactgactggactgcatttagtcatgttagtcacaagcggtctaccccactctggccag 363
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 448 caactgactggactgcatttagccatgttagtcacaagcggtctacccgactctggccag 389
Query: 364 taccattacacccaccagctgagtctaccgtggtgatctgggttggtcttttttttttt- 422
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taccattacattgagcagctgagtctaccgtggtgatctgggttggtctttttttttttc 329
Query: 423 tttct-ggggttcagaaatttgaatatatgaaaacaaagaaagacattctgctccaaggg 481
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttt-taggggttcagaaatttgaatatatgaaaacaaagaaagacattctgctccaaggg 270
Query: 482 ggtgaggctgctaaggggaccagagtgaggggggtggagggatgcatgcatccagtgagg 541
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 269 ggtgaggctgctaaggggaccagagtgagggggatggagggatgcatgcatccagtgagg 210
Query: 542 aacttg 547
| ||||
Sbjct: 209 agcttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_b13.g1 MSMg01no326_b13.g1 CHROMAT_FILE:
MSMg01no326_b13.g1 PHD_FILE: MSMg01no326_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:44 2005
(636 letters)
>mm_chr11_108603911_108604945
Length = 1035
Score = 1135 bits (587), Expect = 0.0
Identities = 624/637 (97%), Gaps = 3/637 (0%)
Strand = Plus / Plus
Query: 1 aacatccattatggaaaaaaa-ttccacaaacttgtgtgttatggttcatctcagttatc 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatccattatggaaaaaaaattccacaaacttgtgtgttatggttcatctcagttatc 260
Query: 60 aactggagggatcaggagccaagaggtttgctcctgtgtgggtctgtcagggctttttaa 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactggaggtatcaggagccaagaggtttgctcctgtgtgggtctgtcagggctttttaa 320
Query: 120 gaaaagctagttaaccaaggtgggcagcctctccccgaggctgggcagccccttcaggtg 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gaaaagctagttaaccaaggtgggcagcctctccccgaggctaggcagccccttcaggtg 380
Query: 180 ggtggccccagtaggaagaggtgctagaaatctgtgttgcttgtgtgcctactggcattt 239
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ggtggccccagtaggaagaggtgctagaaatctgt--tgcttgtgtgcctactggcattt 438
Query: 240 cccccttgtgggcgagtacatctctcctgtgctgccatccatccctcaaccgcatcagaa 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 439 cccccttgtgggcgagtacatctctcctgtgctgccatccatccctcacccgcatcagaa 498
Query: 300 tttgcttctctttgtccttcaagtgtgaactaaagatcggtaaaccacctgctattactg 359
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct: 499 tttgcttctctttgtccttcaagtgtgaactaaagatcagtaaactaactgctattactg 558
Query: 360 aagcatccagcttcatgcactgaacagttcctgagctctgagcatgtgcaggatgcaaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagcatccagcttcatgcactgaacagttcctgagctctgagcatgtgcaggatgcaaga 618
Query: 420 aggccactgtggactacctacgactgtctttcataagctgtatactaaaagtactttgat 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagccactgtggactacctacgactgtctttcataagctgtatactaaaagtactttgat 678
Query: 480 gaaatatttgattgtttccttaattcctaaaatttctgtttgattttgattccttgctga 539
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaaatatctgattgttttcttaattcctaaaatttctgtttgattttgattccttgctga 738
Query: 540 attcactcagtcctttgggctttctcctcccatatgctatttcctttaggagctaccttc 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 attcacccagtcctttgggctttctcctcccatatgctatttcctttaggagctaccttc 798
Query: 600 tcagagtctcaaccagaacctctaaattcaaacatgt 636
|||||||||||||||||||||||||||||||||||||
Sbjct: 799 tcagagtctcaaccagaacctctaaattcaaacatgt 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space: 641650
Effective search space used: 641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
