BAC Information

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BAC

Clone NameMSMg01-326D15
Chromosome11 (Build37)
Map Location 58,418,346 - 58,418,899
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324
Downstream gene2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326D15.T7 (MSMg01no326_d15.b1)MSMg01-326D15.TJ (MSMg01no326_d15.g1)
ACCAG443906AG443907
length723808
length of high quality
(start - end)
557 (45 - 601)173 (77 - 249)
definitionCHROMAT_FILE: MSMg01no326_d15.b1 PHD_FILE: MSMg01no326_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:54 2005CHROMAT_FILE: MSMg01no326_d15.g1 PHD_FILE: MSMg01no326_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTTATCTCGGACTCATTAATCACCTTGGAATTCATGTTCCAGTA
TCAATAGTACAAAGAGAGACAGGTTAGTTAGCTGGGCAGATAAGAGAACA
GTGAAATGTACAGCCACGGACTGTGACTATGAACCTTAGGAGAAGACGTG
AAGGAAAGTGGGGTGGCATTGGGGTGCTGTGAGAACTCCCACAGGGTGGG
AAGGCTGGCTTCCTTCCACTGTAAAGAGAAGTGTCCCTGGCCATGGTTGA
GAGTAGCCTGGGTCTGTCTGCTCCAGGAACTGAGTTTTACTGTTCTTGTT
TGTTTTTTACTTTGACTGGAAAAAGCAGAGGTAACAACAAAAAGCAGAAG
CAGACAAGGGGAGGCCCCCGCTTGAAGGCCAGATGTCCTGCCCAGTAGAG
GAAGCAGTGAACCAACAGACTACGGCACACTCTAGGCAGTGAGAGGGAAA
TCCTTGCAAAGTGTAGACTTGTGACAGGGTCAGGGCTCCTGACTTATAAA
GAGCTCAAGCATGTCAGTGCAAAGGTGACAGCGTCCCTTTAGGCCAGACA
AAGGACCTGAACAACTTTTCACAGTAAGCAGACAGGCGTGGACAAAGTAC
AGGAACTCAGATTAAACAAGATCCACAACTAGATCTACAGTGTGAACAGA
TACTATGGACTCATACCTGTGAG
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACAGGCCACCAGAAGGGTCAA
GTTAAAAGGTTACTTTGCATTTTATTTGTCACTTTGCCTTCTGTGGAATT
TAAATGAGAATAGCTCTCATAGGCTCACATGTTTGAATACCTGGATCCCA
GTTGGAGGGACTATTTGGGAGGGATTAGGAGGTGTAGTGGGGTTTGAAAG
ATTTTCCTTATCAGTTCTCTGCTACATGGTTGCTGCTTTTTTATATGAGC
TCTCCGCTACTGCTCCCACTTTTTTTTTTTTTGTCTGCTGCTCCCCTTCC
TGTCTTTGAAGGTTATTGCGTTATCCTCTTGGCCCTGTAGAAGCCATAAT
TTATCCTTTTTCTTTTTTTGATCCTCCCCCCCCCCTGGGGTTCTTTACAC
GCAATAGGACTCATTTTCTCCCCTCCTTTCTCCCTCGCTAACCGGCTTTA
TTATCCATACCATTCTTGGTTCCATTCGTCCCCGTTTAACCCCGATTATC
CGTCCCCCTGCCTACTATTCGTCGCCACTTTTTCTCCCTTTTTTCCTCTC
CCCGTTTTATAAGTCCTGCTTGTCGAATTTGTTATGTGCGCTTCTCCCCC
AATGCTTTCCCCGTTTATCTACTTTGTTCTCCTCACACTATTTCTCGGGC
CTTCTTACTCCTCCGCTCGCTTCCCTTTTCGCTGTATTCCACCCCCTGTA
ACCCGAATCCGTTTTTTCCGTATTCCCTCTCCTTCTCCTGATATTCTATT
GTCGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_d15.b1 MSMg01no326_d15.b1 CHROMAT_FILE:
MSMg01no326_d15.b1 PHD_FILE: MSMg01no326_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:54 2005
         (557 letters)



>mm_chr11_58418143_58419099
          Length = 957

 Score =  951 bits (492), Expect = 0.0
 Identities = 539/560 (96%), Gaps = 12/560 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccttatctcggactcattaatcaccttggaattcatgttccagtatcaatag 63
           ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 757 ggaattctctttatcttggactcattaatcaccttggaattcatggtccagtatcaatag 698

                                                                       
Query: 64  tacaaagagagacaggttagttagctgggcagataagagaacagtgaaatgtacagccac 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 697 tacaaagagagacaggttagttatctgggcagataagagaacagtgaaatgtacagccac 638

                                                                       
Query: 124 ggactgtgactatgaaccttaggagaagacgtgaaggaaagtggggtggcattggggtgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggactgtgactatgaaccttaggagaagacgtgaaggaaagtggggtggcattggggtgc 578

                                                                       
Query: 184 tgtgagaactcccacagggtgggaaggctggcttccttccactgtaaagagaagtgtccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgtgagaactcccacagggtgggaaggctggcttccttccactgtaaagagaagtgtccc 518

                                                                       
Query: 244 tggccatggttgagagtagcctgggtctgtctgctccaggaactgagttttactgttctt 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cggccatggttgagagtagcctgggtctgtctgctccaggaactgagttttactgttctt 458

                                                                       
Query: 304 gtttgttttttactttgactggaaaaagcagaggtaacaacaaaaagcagaagcagacaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtttgttttttactttgactggaaaaagcagaggtaacaacaaaaagcagaagcagacaa 398

                                                                       
Query: 364 ggggagg-----cccccgcttgaaggccagatgtcctgcccagtagaggaagcagtgaac 418
           |||||||          | ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 397 ggggaggttttt-----gtttgaaggtcagatgtcctgcccagtagaggaagcagtgaac 343

                                                                       
Query: 419 caacagactacggcacactctaggcagtgagagggaaatccttgcaaagtgtagacttgt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caacagactacggcacactctaggcagtgagagggaaatccttgcaaagtgtagacttgt 283

                                                                       
Query: 479 gacagggtcagggctcctgacttataaagagctcaagcatgtcagtgcaaaggtgacag- 537
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 282 gacagggtcagggctcctgacgtataaagagctcaagcatgtcagtgcaaaggtgacagt 223

                               
Query: 538 cgtccctttaggccagacaa 557
           | ||||||| ||||||||||
Sbjct: 222 c-tccctttgggccagacaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)