BAC Information

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BAC

Clone NameMSMg01-326E22
Chromosome11 (Build37)
Map Location 16,058,017 - 16,058,649
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326E22.T7 (MSMg01no326_e22.b1)MSMg01-326E22.TJ (MSMg01no326_e22.g1)
ACCAG443966AG443967
length711716
length of high quality
(start - end)
232 (351 - 582)637 (80 - 716)
definitionCHROMAT_FILE: MSMg01no326_e22.b1 PHD_FILE: MSMg01no326_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:00 2005CHROMAT_FILE: MSMg01no326_e22.g1 PHD_FILE: MSMg01no326_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTCGGATTTTCAGNTTGTNCGNGGAATTCAAGGCTACCANTACCATAG
TTAAAGCAATTTACTGCAAACCAACAGCCAATATCAAATTATATGGCGAC
ATACTTTAGGCAATCCCACTGAAATTGGGGACAATACAAGGATGCCCACT
CTCCCCATATTTATTCACTATAGTACTCAAAGTGTTAGCTAGAAAAATTA
AGACAACAAAAAGAGATCAAGGTGTTTTTTATTGGTAAAGAAAAAATAAA
GGTATCGCTATTTGCAGATGATATGATAGTATACATAAGCTTCCCATAAT
TTCTACCAGAGAACTTCTCCAGCTGATAAACAACTTTTTTACACCGCCCC
GATATAAAATTAACTCAAATAAATCAGTAGCCTTCCTTTACACCAAGGAT
AAACAGGCTGAGAAAGAAATTAGGTAAACAATTCCCTTCAAAATAGCCAC
AAACAATATAAAATGTCTTGGGGTAACTCTAACCAAACCTGTAAAACAAT
AACTTTAAGTCTCTCAAGAAAGAAATCAAAAAAAGATCTCAGAAAATGGA
GAGATCTCCCATGCTCATGGATTGGCAGAAATAACATAGTAAAAAGGGCC
ATCCTACCAAAGGCAATCTATAGATTTTTTGTTTTCTCCTTCAAAATCCC
AACACCATTCACCAAAGACATGGAAAGAGGAATTCTCAAATTCATCTGGA
AAAGGTAAAAA
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTTTTCAATTACTGAGG
GAAGAGACAGAATTCAAAGTAGTTCAAAAGACTATCTACTTTCTCCAGTC
ACACCTGGAGAACAAACATGTGAGAACATGTTTCCAAGTGCTTTTTCTCT
ATATGATGTCTTTTTTCTAACTTGCAAATCCTTTGCATTTTTTGAATAAA
CTGTGGTATCATCACTTCTGTTTATAGGTTTTTCTCATCTTTCCTCTAGA
ATAGATTGCTGAATTGAGTTCCTGACTTCCCTGGAACATCTCTATTCTGA
TAGCCTAGATAGAACTCTGTATCAAAACATTTTATACAGTTTATACAATG
TATTTTCAGGTCACAGTTTCTGACCCTCACATTTACCTTCATGCCACTTG
TTCATAGTACATGACTAATACATTTAAGGAGTTTATATAATGAATAAAGT
CTGAATAAATGAAGGATGATGGACAGAGAGAAAGGGCAGAGGCTATGCTA
CCCGCTTTTCAAATGATGAATATGCTTCTCATTCACAATGTTTTTCTCAA
ATAAGGTTATACAGACATCAGAGAATGTACAAAAGTAATTTTAGGGATTC
AAGCCTTACAATGCAGAGATTAGTTGAATATGATGAATATGGTTGAGACT
CCATGAACACTCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_e22.g1 MSMg01no326_e22.g1 CHROMAT_FILE:
MSMg01no326_e22.g1 PHD_FILE: MSMg01no326_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:00 2005
         (637 letters)



>mm_chr11_16057814_16058850
          Length = 1037

 Score = 1201 bits (621), Expect = 0.0
 Identities = 630/633 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   atttttcaattactgagggaagagacagaattcaaagtagttcaaaagactatctacttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 atttttcaattactgagggaagagacagaattcaaagtagttcaaaagactatctacttt 777

                                                                       
Query: 64  ctccagtcacacctggagaacaaacatgtgagaacatgtttccaagtgctttttctctat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ctccagtcacacctggagaacaaacatgtgagaacatgtttccaagtgctttttctctat 717

                                                                       
Query: 124 atgatgtcttttttctaacttgcaaatcctttgcattttttgaataaactgtggtatcat 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 716 atgatgtcttttttctaacttgcaaatcctctgcattttttgaataaactgtggtatcat 657

                                                                       
Query: 184 cacttctgtttataggtttttctcatctttcctctagaatagattgctgaattgagttcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 656 cacttctgtttataggtttttctcatctttcctctagaatagattgctgaactgagttcc 597

                                                                       
Query: 244 tgacttccctggaacatctctattctgatagcctagatagaactctgtatcaaaacattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgacttccctggaacatctctattctgatagcctagatagaactctgtatcaaaacattt 537

                                                                       
Query: 304 tatacagtttatacaatgtattttcaggtcacagtttctgaccctcacatttaccttcat 363
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 536 tatacagtttatacaatgtattttcaggtcacagtttctgatcctcacatttaccttcat 477

                                                                       
Query: 364 gccacttgttcatagtacatgactaatacatttaaggagtttatataatgaataaagtct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gccacttgttcatagtacatgactaatacatttaaggagtttatataatgaataaagtct 417

                                                                       
Query: 424 gaataaatgaaggatgatggacagagagaaagggcagaggctatgctacccgcttttcaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaataaatgaaggatgatggacagagagaaagggcagaggctatgctacccgcttttcaa 357

                                                                       
Query: 484 atgatgaatatgcttctcattcacaatgtttttctcaaataaggttatacagacatcaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atgatgaatatgcttctcattcacaatgtttttctcaaataaggttatacagacatcaga 297

                                                                       
Query: 544 gaatgtacaaaagtaattttagggattcaagccttacaatgcagagattagttgaatatg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gaatgtacaaaagtaattttagggattcaagccttacaatgcagagattagttgaatatg 237

                                            
Query: 604 atgaatatggttgagactccatgaacactctgt 636
           |||||||||||||||||||||||||||||||||
Sbjct: 236 atgaatatggttgagactccatgaacactctgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)