Query= MSMg01no326_k20.b1 MSMg01no326_k20.b1 CHROMAT_FILE:
MSMg01no326_k20.b1 PHD_FILE: MSMg01no326_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:25 2005
(581 letters)
>mm_chr11_112114827_112115812
Length = 986
Score = 1007 bits (521), Expect = 0.0
Identities = 564/581 (97%), Gaps = 5/581 (0%)
Strand = Plus / Minus
Query: 6 gaattcactgattacgctaggctgactggctagcaagccttagggatcttgcctatctct 65
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattcactgagtaggctaggctgactggctagcaagccttagggatcttgcctatctct 839
Query: 66 gcttccccagtggtgagattacaggtatgtgccataaggctcagacttatttttttgttt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gcttccccagtggtgagattacaggtatgtgccataaggctcagacttatttttttgttt 779
Query: 126 ttgtttttcttttatttgtgttagggtcaaattcaggccctcattattgccagtaaatca 185
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 778 ttgtttttcttttatttgtgttagggtcagatccaggccctcattattgcaagtaaatca 719
Query: 186 ctttactgaggaattattatctctcccatgattttctactttaaatctgaggccaatggg 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gtttactgaggaattattatctctcccatgattttctactttaaatctgaggccaatggg 659
Query: 246 gtctggactacagaagctcgctctttgcagagctgtgcaggagaactaccagcccaaggt 305
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 658 gtctggactacagaagctcactctttgcagagctgtgcaggagaactacctgcccaaggt 599
Query: 306 cctggttttacagcatttaggctgggtctgacttctgaagacatgggattcataagcatg 365
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cctggttttacagcacttaggctgggtctgacttctgaagacatgggattcataagcatg 539
Query: 366 gtctaacaacggttcccagaggattccaacccaatccttgagcaggtgatccatcaatag 425
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtctaagaatggttcccagaggattccaacccaatccttgagcaggtgatccatcaatag 479
Query: 426 taccacttttatgacttacttgatctctcaatcttgttaaa-----gtttgactcaatat 480
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 478 taccacttttatgacctacttgatctctcaatcttgttaaactaaagtttgactcaatat 419
Query: 481 ggacaaagatggactagaacatattgaatatttcttcataaactagctcctgggattcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggacaaagatggactagaacatattgaatatttcttcataaactagctcctgggattcaa 359
Query: 541 gagatggctcatcattaaagaacacttggtgatctttcaga 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagatggctcatcattaaagaacacttggtgatctttcaga 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 986
Length adjustment: 10
Effective length of query: 571
Effective length of database: 976
Effective search space: 557296
Effective search space used: 557296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_k20.g1 MSMg01no326_k20.g1 CHROMAT_FILE:
MSMg01no326_k20.g1 PHD_FILE: MSMg01no326_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:25 2005
(652 letters)
>mm_chr11_112026365_112027416
Length = 1052
Score = 919 bits (475), Expect = 0.0
Identities = 495/503 (98%), Gaps = 5/503 (0%)
Strand = Plus / Plus
Query: 154 atggctgaagggagagggtcactggttcccccatagctctgcctatagattcaagcaact 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atggctgaagggagagggtcactggttcccccatagctctgcctatagattcaagcaact 413
Query: 214 gttacatataataaaagctttaaaaaattaacaaggactatcagctcaagagacgatgag 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gttacatataataaaagctttaaaaaattaacaaggactatcagctcaagagacgatgag 473
Query: 274 aggataatatcccttcccagcctttcaattaagatcaaatggagaggacagct-caccaa 332
|||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 474 aggataatatcccttcccagcctttcaactaagatcaaatggagaggacag-tgcaccaa 532
Query: 333 ttgccattccaaacaggcctagtgcccaatctgtctgagaaggggataaatatgaataat 392
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttgccattccaaagaggcctagtgcccaatctgtctgagaaggggataaatatgaataat 592
Query: 393 ggtatatttgcaactatcttttatttctgtttatctatgccatttttacacggatgagtc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggtatatttgcaactatcttttatttctgtttatctatgccatttttacacggatgagtc 652
Query: 453 accctcttaggaatgaaatgactacatatttcatctcttttattttgaaaaagggatcca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 accctcttaggaatgaaatgactacatatttcatctcttttattttgaaaaagggatcca 712
Query: 513 aaccctttagccacaagggccatgcttgctggaggaggaggaggaggagg---tgaatat 569
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 713 aaccctttagccacaagggccatgcttgctggaggaggaggaggaggaggaggtgaatat 772
Query: 570 tttgggaaaacaaaagtaggtagaagccttagggtacctgcccatcccttctgcaagctt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tttgggaaaacaaaagtaggtagaagccttagggtacctgcccatcccttctgcaagctt 832
Query: 630 caacatggcgatatggatgaggt 652
||||||||||||||| |||||||
Sbjct: 833 caacatggcgatatgcatgaggt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
