BAC Information

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BAC

Clone NameMSMg01-326M16
Chromosome11 (Build37)
Map Location 24,017,831 - 24,018,466
singlet/doubletsinglet
Overlap geneBcl11a
Upstream geneXpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326M16.T7 (MSMg01no326_m16.b1)MSMg01-326M16.TJ (MSMg01no326_m16.g1)
ACCAG444319AG444320
length735717
length of high quality
(start - end)
584 (65 - 648)636 (82 - 717)
definitionCHROMAT_FILE: MSMg01no326_m16.b1 PHD_FILE: MSMg01no326_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:33 2005CHROMAT_FILE: MSMg01no326_m16.g1 PHD_FILE: MSMg01no326_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGATCCGCGGA
ATTCAATGGTCTCACCATGTTCCCCATCATCCTAAAGTGGCTGGTCTGAT
AGAAAGATGGAATGGCTTTTTGAAGAAACAGTTACAGTGCCAATTAGGTG
GCAACAGCATGGAGGGCTGGGGCAGAGTTCTTCAGAAGGCAGTATATGCT
TTGAATCAATATCCAATATATGGTACAGTTTTCCCCATAGCCAGGATCCA
TGGGTCCAGGAATCAAGGAGTGGGGAAGGGAATAGTTCCACTCACTATCA
CTCCTAGTGACCCTCTAGGAAAAATTTTGCTTTCTTTCCCTACAACTCTA
GATTCTGCTGGCCTAGAAGTTTTGGTTCCAGAAGGGGGAGTGCTTGTACC
AGGAGCCACAACAAACATTCCACTGAACTGGAAACTCAGACTCAGAAGCC
CCTGGTCATTTTGGGCTTCTAATACCCTTAACCCGAAAGGCTAAGAAAGG
AATAACAGTGTTAGAGGGGTGATAGATACAGATTACCATGGGGAAATTGG
ATTACCTCTCCACAATGAAGGTAAGCAAGATTATGTCTGGAGTGCAGAAG
ATCCCTTAGGACACCTCTTAGTACTACCATGTCCTGTGACTAAAGTCAAT
GGGAAACTACAACAGCCTAATCCAAGTAGGATGACTAACGACCCCGACCT
CTCAGGAATGAAGGTATGGGGCCTTCCTCCAGGAN
NNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGATGATACTCGACT
GTTTCCTTACCAGTGGGTGTAAAGTACTAATGGCCACTTGTTAACATGCT
TTGTGCTGCTAGTACTTCCCTCTGATTTCTGACATCCCTCCCCACTTCTC
TCTCCTCCCCCCTAACCCCCCCACCAAGATGCTTTAGGTTAACAAATATG
ATCAAAGTCAGAGACTTAAAAGAACACAACTCTGTCAGTAACCATCATGT
TTCTCCTGTTGCAGTTTCATGAAATCAAGCACCATTCCGTCAACGTAAGT
TCCCTAAGTCATGGAGAGGCTGTGCGTGCTAAGTCTAAGACTTGGGATGG
AAAGTTGGAGGAGAGGGCCATTCCCCTTCTCCAGCCTCTGCCTTCTTCTA
TGGCAGCAAGAGTGAATGGCAAAGCAGGGGAAGAGCAGATCTCTCACCCA
CAATTAACAGATCAATGACATCGTGAGGTAGGTGGGGTGCATGCTACGCT
GCAGTCAAATATGTAGGCACAGTTACCAAGAGGCCCCAGTAACCAAGCGG
CTCCAACACCGGGCATGGGGACTCCTCAAAGGGAAAGCAAATGGAACCTC
TCAGACTGACTGGACTGAGCACGTGGCAGCTCTTCCCAATGTCATAGGAA
CTCCAAAATGGGTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_m16.g1 MSMg01no326_m16.g1 CHROMAT_FILE:
MSMg01no326_m16.g1 PHD_FILE: MSMg01no326_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:33 2005
         (636 letters)



>mm_chr11_24017631_24018666
          Length = 1036

 Score = 1139 bits (589), Expect = 0.0
 Identities = 625/637 (98%), Gaps = 2/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgatgatactcgactgtttccttaccagtgggtgtaaagtactaatggccacttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 catgtgatgatactcgactgtttccttaccagtgggtgtaaagtactaatggccacttgt 777

                                                                       
Query: 61  taacatgctttgtgctgctagtacttccctctgatttctgacatccctccccacttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 taacatgctttgtgctgctagtacttccctctgatttctgacatccctccccacttctct 717

                                                                       
Query: 121 ctcctcccccctaacccccccaccaagatgctttaggttaacaaatatgatcaaagtcag 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 716 ctcctcccccctaacccccccaccaagatgctttaggttaacaaatctgatcaaagtcag 657

                                                                       
Query: 181 agacttaaaagaacacaactctgtcagtaaccatcatgtttctcctgttgcagtttcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agacttaaaagaacacaactctgtcagtaaccatcatgtttctcctgttgcagtttcatg 597

                                                                       
Query: 241 aaatcaagcaccattccgtcaacgtaagttccctaagtcatggagaggctgtgcgtgcta 300
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaaacaagcaccattccgtcaacctaagttccctaagtcatggagaggctgtgcgtgcta 537

                                                                       
Query: 301 agtctaagacttgggatggaaagttggaggagagggccattccccttctccagcctctgc 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtctaaggcttgggatggaaagttggaggagagggccattccccttctccagcctctgc 477

                                                                       
Query: 361 cttcttctatggcagcaagagtgaatggcaaagcaggggaagagcagatctctcacccac 420
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 476 tttcttctatggcagcaagagtgaatggcaaagcaggggaagaacagatctctcacccac 417

                                                                       
Query: 421 aattaacagatcaatgacatcgtgaggtaggtggggtgcatgctacgctgcagtcaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aattaacagatcaatgacatcgtgaggtaggtggggtgcatgctacgctgcagtcaaata 357

                                                                       
Query: 481 tgtaggcacagttaccaagaggccccagtaaccaagcggctccaacacc-gggcatgggg 539
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
Sbjct: 356 tgtaggcacagttaccaagtggccccagtaaccaagcggctccaacacctggg-atggag 298

                                                                       
Query: 540 actcctcaaagggaaagcaaatggaacctctcagactgactggactgagcacgtggcagc 599
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 297 actcctcaaagggaaagcaaatggaacatctcagactgactggactgagcacgtggcagc 238

                                                
Query: 600 tcttcccaatgtcataggaactccaaaatgggtatgt 636
           ||||||||||||||||||| |||||||||||||||||
Sbjct: 237 tcttcccaatgtcataggagctccaaaatgggtatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)