BAC Information

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BAC

Clone NameMSMg01-327F17
Chromosome11 (Build37)
Map Location 81,484,095 - 81,484,436
singlet/doubletsinglet
Overlap geneAccn1
Upstream geneMyo1d, Tmem98, Spaca3, 1700071K01Rik
Downstream gene5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327F17.T7 (MSMg01no327_f17.b1)MSMg01-327F17.TJ (MSMg01no327_f17.g1)
ACCAG444737
length725742
length of high quality
(start - end)
---342 (69 - 410)
definitionCHROMAT_FILE: MSMg01no327_f17.b1 PHD_FILE: MSMg01no327_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:15 2005CHROMAT_FILE: MSMg01no327_f17.g1 PHD_FILE: MSMg01no327_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXX
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAGTGAGGAGGCAGCGCACAGCTTAGATGGG
TGTGGCTGCCTACTTAGCAATGGCTTCCCTCTCAGGAAGAAGAATCATCA
AAGGAATGCAAAGGCAATTTTGGAGACAGTAAATCCTTGGTTCAGATTTT
AGCCTAGATCCTCACAGTCTCTAGAAACTCCGTGGGCCTCAGTCAGTTTC
CAGTCTGTTGAGGGGGTTGGCATAGCTATTTATTTATGTCTGGGAAGCTC
ATCTAAAACCTAGTGACTTTGCAGCACAAGCTGGTAAGCTCACTAGATGG
ATAAAAGCATATATACTATCAAGCCTGAGGACCTCAATTTGATCCCTAAG
ACCTGCTTGGCACACAACCCCCTTTCACCCTTGAGAAGCATGCATGTGTT
ACAGGAGGCACAATCCCCATATACTCACACACATACATGTGTATAAATGA
ATAAATAAATGTAAAATCTTTTAACACGACACTACTTGTCGCTTACATTT
TTACTTATACTCTTCATCTTGTTTATTAATCCCTCAGTCTGTCTTGACTC
TCCAGGATTGTCCAATCTCTCCTCTGATCAATAGTTTCCCCCTGAAGGCT
GTGGCTTCATCATGAACTTCTTTCTTCTTTCCTGTCGGCCGCGTAAGGTT
TAACTCATGTGTTGTCACCCCCCCTTCCCTATTTTTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_f17.g1 MSMg01no327_f17.g1 CHROMAT_FILE:
MSMg01no327_f17.g1 PHD_FILE: MSMg01no327_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:15 2005
         (342 letters)



>mm_chr11_81483895_81484636
          Length = 742

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtgaggaggcagcgcacagcttagatgggtgtggctgcctacttagcaatggcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtgaggaggcagcgcacagcttagatgggtgtggctgcctacttagcaatggcttcc 260

                                                                       
Query: 61  ctctcaggaagaagaatcatcaaaggaatgcaaaggcaattttggagacagtaaatcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcaggaagaagaatcatcaaaggaatgcaaaggcaattttggagacagtaaatcctt 320

                                                                       
Query: 121 ggttcagattttagcctagatcctcacagtctctagaaactccgtgggcctcagtcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttcagattttagcctagatcctcacagtctctagaaactccgtgggcctcagtcagtt 380

                                                                       
Query: 181 tccagtctgttgagggggttggcatagctatttatttatgtctgggaagctcatctaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagtctgttgagggggttggcatagctatttatttatgtctgggaagctcatctaaaa 440

                                                                       
Query: 241 cctagtgactttgcagcacaagctggtaagctcactagatggataaaagcatatatacta 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagtgacaatgcagcacaagctggtaagctcactagatggataaaagcatatatacta 500

                                                     
Query: 301 tcaagcctgaggacctcaatttgatccctaagacctgcttgg 342
           ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagcccgaggacctcaatttgatccctaagacctgcttgg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)