BAC Information

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BAC

Clone NameMSMg01-327I24
Chromosome11 (Build37)
Map Location 77,297,414 - 77,297,766
singlet/doubletsinglet
Overlap geneAnkrd13b
Upstream geneAbr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6
Downstream gene2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327I24.T7 (MSMg01no327_i24.b1)MSMg01-327I24.TJ (MSMg01no327_i24.g1)
ACCAG444889AG444890
length743735
length of high quality
(start - end)		599 (41 - 639)354 (65 - 418)
definitionCHROMAT_FILE: MSMg01no327_i24.b1 PHD_FILE: MSMg01no327_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:29 2005CHROMAT_FILE: MSMg01no327_i24.g1 PHD_FILE: MSMg01no327_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATACATACCCTACCCAAGAAACCATAATATATATGCAAAGGACCTGCAAA
AGAAATATCCCAAACTTAACATTATAAGCCATAGAACCTCCAAAGATGTG
ATTGAGTTTGTTTTTGTGTTGGCCATCAACTGCTAGACTAAGGCATACAA
GTAAGAGTAATTTGTTTCTCAGTGAGACTCCCTTACAGAAAATTAATTTT
TATTTCCAAGTAGCTATCAGTTGGAGATATTATCTTTAGGAATTCAGAAA
CAAAGTGTGGTGGTTTGAATATGCTTGGCCCATGGGATGTGACACTATAA
GGCAGTGTGGCCTTGTTAGAGTAGGGTAGGCCTTGTTGGAGGAAGTATGT
CACTGTGGGGGGTGGAGGCATGCGCTCGAATCTTCTTTCAGCCCTGGGAC
CTCATCTGGTGCAGACCCTTACAGGCCCCATGCAAACTGCCTTACTCTCT
ATGAGTTTACCAGCCTTGTAGTTAAAAAACCTTGATTCTTTGGTCTTCTC
CGTCCCCTTTAAGAAAGTAGTAAGGTCAGGCATGGTGAAGTGCACCTTTA
ATCCCAGCGCTCTGGATACAGAGGCAGGCAGATTTCTGCGAGTTCAAGGC
TAGCCTGGTCTACAGAACAAGTTCCAGGACAGCCAGTGTTACTTATAGAA
ACCCTGTCTCATGAAAATTACCCGTTATAATAACTTCCTACGT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCGCCAATTCATTTCCATGGTTTAAAATACTTAGTTGTTTA
TAGGAGGTTTTCTTTTTAAGTTAAAAATATTTATTTTATTTTAAAATTGT
GTGTCTGCATGTGGGTATGTGCCTTGAGTGCAGGTGTCTGAGGAGGCCGG
AGCAAGGCAGGAGCTCCTCTGGGGCTGCTCAGTCTGGGCGTGGCCTCCAG
AGCAGTGCTTTCAGCACCCACTCTCTCTCCCCAGCTCTTGGGTTTCTACT
GAGACAGCTTCCTGTCTTCAACTACTCACCGCGTGTACTCACTGGGCTCA
ACTCTGTAATTACAAATACTTCCGGAAGTATACCTCTTGGTTTATCACTC
ATGCTTTTTTATATTATCACCCCCCCCTCCTGACCCTCGATGTAGTCATC
TGTGCATTTCTTTAACAAATGTGCATTAGCCACTGGTTACATGCCAGATG
CTGTCCAGGGTCTGGGAAGACATTGATGAGCAAAATAGGCAGGATCCAGC
CTTGCAGCGTGCAGAGCCTGGGCGAGGGACACTGAGAGCAAACAAGCCTG
GGGTGCTGCAGAGATTGAGACAGGATAAGGGACAGCGGAGAGATAAGCAG
CGACTGTCACCTCAGGTTGGTTGTCAGGTTAGACTAAGCTATTGATGTGA
CATTTGTTGGTAACCATATGTGATAAAGAAAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_i24.g1 MSMg01no327_i24.g1 CHROMAT_FILE:
MSMg01no327_i24.g1 PHD_FILE: MSMg01no327_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:29 2005
         (354 letters)



>mm_chr11_77297130_77297883
          Length = 754

 Score =  683 bits (353), Expect = 0.0
 Identities = 353/353 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcatttccatggtttaaaatacttagttgtttataggaggttttctttttaagttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aattcatttccatggtttaaaatacttagttgtttataggaggttttctttttaagttaa 578

                                                                       
Query: 61  aaatatttattttattttaaaattgtgtgtctgcatgtgggtatgtgccttgagtgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaatatttattttattttaaaattgtgtgtctgcatgtgggtatgtgccttgagtgcagg 518

                                                                       
Query: 121 tgtctgaggaggccggagcaaggcaggagctcctctggggctgctcagtctgggcgtggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgtctgaggaggccggagcaaggcaggagctcctctggggctgctcagtctgggcgtggc 458

                                                                       
Query: 181 ctccagagcagtgctttcagcacccactctctctccccagctcttgggtttctactgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctccagagcagtgctttcagcacccactctctctccccagctcttgggtttctactgaga 398

                                                                       
Query: 241 cagcttcctgtcttcaactactcaccgcgtgtactcactgggctcaactctgtaattaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagcttcctgtcttcaactactcaccgcgtgtactcactgggctcaactctgtaattaca 338

                                                                
Query: 301 aatacttccggaagtatacctcttggtttatcactcatgcttttttatattat 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatacttccggaagtatacctcttggtttatcactcatgcttttttatattat 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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