BAC Information

Click to search

BAC

Clone NameMSMg01-327J01
Chromosome11 (Build37)
Map Location 79,620,825 - 79,621,170
singlet/doubletsinglet
Overlap genenone
Upstream gene1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
Downstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327J01.T7 (MSMg01no327_j01.b1)MSMg01-327J01.TJ (MSMg01no327_j01.g1)
ACCAG444891AG444892
length757745
length of high quality
(start - end)
304 (71 - 374)349 (74 - 422)
definitionCHROMAT_FILE: MSMg01no327_j01.b1 PHD_FILE: MSMg01no327_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:29 2005CHROMAT_FILE: MSMg01no327_j01.g1 PHD_FILE: MSMg01no327_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTTCAGAGATGTTCCTGTCATTCTTGCTCAGGGGCCCTGTTAATTTT
CTGTGTATTTTTGCAGTGTTAGTGTCTGTGCTGTGGAAGCAAGAATTCAT
GTTGTTTATTTGAGATGAAAGTCTCCCTGTTGTCCAGACTGACTTGAGCA
ATCCTCCTGCCTTAGCTTCTGAAGTAGCTGAGACTACAAGTATATGCTAC
CATGCTGGGCTCCAAATTGTGATTTTTTATATATATAAAATTTTTTTAAG
GAAACATTTATATTTATTACTTATTTATTTGTTACTTACTAAGTTTTTTG
AGACAGGATCTCTCACTTATGTAACTCTGGCTGTCCTGTGACTGGATCCA
GGCTGCCTTGGTCTCACGCACACCCCTTGTATGTTTCTCTGAAGCATTGT
TGTTAAAGAGCCAGACCACTATGCCCAGCCAACTTATTTCCCTTTTATTT
CACTTGCCCGATCGTTCTGTTATGCTTGTTCGCGCTCTTTTATGTGTGCC
GTACTCCCTCTATTTCCTTAATAGTTTCATTTGATTTTCCCGTGAGCTTG
GATTCTCCTTATTTATTGCGCTATCTGTTGCGCCCTCTTATCTCCTCATT
CCCCTCCTTCGTATTTTATATCCTTTCCTCCCCTCATTTGATCTGTAATC
TCTCTGCCCCTGCAACATTCCCCAATTATATTTCCCTACTCTCCATTTGC
CCTCTCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGTATACAGAGAGAGTTCCAGACAGA
GTGGACAGCCAGAGCTATACAGAGAGACCCTATCTCTAAATACCCAAAAC
CAAACAAACAAAAAAGAGGGGGGGGGGAATAAATAAATATGGGCCTCAAC
TCCTAGATGGTAGGTGACATTTTGTAGAGTCCACAAACAAACCGAGGGTT
ATAAAGTAAGAAAAACTGCCTCCTGTGAAGGCAGTTTTGAGTTACTCCGC
TCTCTTCTCCTGTGGTGGGCGTGTATCACTCTTAAAACGGCAAGCTGCCT
TAAATATTACCTTAAACAACATTCCATCTTGTGCTAAGGGAAACGAAATG
CTCAGCTGGCTCCACACCCACGCCCCAGGCCCACAAATGAGCTGGACACA
ATCCAGAGAAGGGGGTTGGTAACAATTTGAGGTCCCCCAGTTGGCAGAGA
GGCACTCCCCGAGTGTACGCTTCCGAGCGCCCAGAAGCTCACTCTATCGC
TTTAAAGAATAACGATGGGGTCACAATGGTTGGCTGAGACTACACAAGGT
GAAAGGGAACTCCAGTCGTGTCTAACCAGGAAATCCTGTGGTGAAGTTCC
CAAACCTGTCAGGGCGCTCTAATCTTCTTGCCCCTCACCAGGTAAAGTAA
AATTGGTGGCATGTACTCCCGCACCCTGGCCTTGAGACTTTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_j01.g1 MSMg01no327_j01.g1 CHROMAT_FILE:
MSMg01no327_j01.g1 PHD_FILE: MSMg01no327_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:29 2005
         (349 letters)



>mm_chr11_79620558_79621303
          Length = 746

 Score =  640 bits (331), Expect = 0.0
 Identities = 344/349 (98%), Gaps = 3/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtatacagagagagttccagacagagtggacagccagagctatacagagagaccctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tggtatacagagagagttccagacagagtggacagccagagctatacagagagaccctat 554

                                                                       
Query: 61  ctctaaatacccaaaaccaaacaaacaaaaaagaggggggggggaataaataaatatggg 120
           |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||
Sbjct: 553 ctctaaatacccaaaaccaaacaaacaaaaaa-aggggggggg--ataaataaatatggg 497

                                                                       
Query: 121 cctcaactcctagatggtaggtgacattttgtagagtccacaaacaaaccgagggttata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 496 cctcaactcctagatggtaggtgacattttgtagagtccacaaacaaaccaagggttgta 437

                                                                       
Query: 181 aagtaagaaaaactgcctcctgtgaaggcagttttgagttactccgctctcttctcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aagtaagaaaaactgcctcctgtgaaggcagttttgagttactccgctctcttctcctgt 377

                                                                       
Query: 241 ggtgggcgtgtatcactcttaaaacggcaagctgccttaaatattaccttaaacaacatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggtgggcgtgtatcactcttaaaacggcaagctgccttaaatattaccttaaacaacatt 317

                                                            
Query: 301 ccatcttgtgctaagggaaacgaaatgctcagctggctccacacccacg 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccatcttgtgctaagggaaacgaaatgctcagctggctccacacccacg 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 746
Length adjustment: 9
Effective length of query: 340
Effective length of database: 737
Effective search space:   250580
Effective search space used:   250580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)