BAC Information

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BAC

Clone NameMSMg01-328E02
Chromosome11 (Build37)
Map Location 26,834,824 - 26,835,146
singlet/doubletsinglet
Overlap geneLOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328E02.T7 (MSMg01no328_e02.b1)MSMg01-328E02.TJ (MSMg01no328_e02.g1)
ACCAG445401AG445402
length780975
length of high quality
(start - end)
329 (44 - 372)---
definitionCHROMAT_FILE: MSMg01no328_e02.b1 PHD_FILE: MSMg01no328_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:21 2005CHROMAT_FILE: MSMg01no328_e02.g1 PHD_FILE: MSMg01no328_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAATCCGCGG
AATTCTGTGGAAAGCTATTATAAATGTGACTTCCCTGTGACTTCCTCCCT
AGTATTTAGAATAGGCTCCCTGAAGGGGCTGTAGTCTCTCAAGATTCTAT
GAAAAGTAGACATAACTATTTGTAATGTTAAATTCCTGTGTTCATAGGAA
TGCATTGCTCTGCTTGAGTACAATCTAAGAGTTCAGTAGCTTAACTTAAT
CTTTGGGGAGGAAATTTACTCTGGCCATTAAACCTTACAAGGCTAGAGTA
CTGTAGAAGCTACTAAACTGATTTTAGAGCAGTACCATGTCTGTATTAAT
GTGGTGAGAAAATCTCTATGGCATAAGGTGAGCTTGCACAGTGAGCATTC
ATTATATAATCTTAAGATCCCTATTCCCCGCTGTATAATGTAAGGGGATT
CCCCATTTGGGGCTGAGATTAGTACACCCCATGTTATATGTAAATTGTAC
CATGTTTTCACTTCCACTCTCCCTAATATACTTGTTTTATACTTTTCTTG
ATATTTGTATTTTAAAAGTAGAACACACTCTTTTCTTGTTGCTTTTACTC
ATATATAGACACCATTAACATACACTGCAATTATTTTCCCCCTATATTGT
ATAACTTTTTCTTATCCTTCTTTTGTCATATGTTCCTGCTTAATCTTTAC
CTACCCCTCATATAATCTTCTATAAAACAAATCCTAATACACTTTTTACC
TCTACCCATAATCTATCCCCTAGTCTCCTT
CATAACTAGAGGGGAGAGCTGTGGGGGCGCGCTGGTTCATCAAACATATA
TGTAGGTGACATATAAGAAGGATCTCCCGCGAAATTTGAGTAACAAGAGT
AATGTTAGACTGGTCCATGTCGTTATGCCTTGGAAGGGACGTTGGCTACC
GTTCCAACATGAGTCGTCATCTCTACCCTTACTACAATGATGAAAAGGAA
TCGGTGTACTTATTATCAAACAATGTATCGTGAGTTCGCAGAGCTGGGAC
GGCTGCATGAACCATATAAATTCATGTCTGTATGGGGGAGGGGTCTCCAT
TTGTCTCTAACATTAATAGCTTCGCATGCTCATTGCGTGTTCCTAGCGAT
AGTGAATGTATCATCTATTCTGCACTAGGCGTGCACGCCCAGAGAACATT
TCCTGTCTATCGTATAAAACACTACTATTACATCTTCCCTTTTAATTACT
CTGTCAGCGAATTCATAATCCATTCTTTAATTCCTATTAGAATGGTGTTT
TTGCAAGCTAATGCTATGCTAATTTACTCACCCCCACTCCGTATTTTATC
TTAATCGATCTTGTACATGTTTTTAATCTCTCCTTATACCCTCTTGAATC
GTATTTTACCTCGTACTTGACTTCAACCCTATCATTCCTTATGTCTGATT
AGTTAACCCTGACCCCTTTTAAGTTTACCTTTATTATCGCTCCTTACATC
TCTCCTCTCTTTTTCTCTGTCTAATGGGCCTTTTGCAGACTTACCTGTCC
GATATCATGTGCGCTCTGTCTTATTCACGGTTTATATCACTCCTCACGAT
ATCATTATATGTATTATGTAATCTGTTCTCGCCTTTGTCTTACCTATATT
CTTCCTGCTTACACCTATGTATTGTATATGTGACCACTTGGTTTCCGCGA
GTGCTATTATCACATACTGGACTAGCTTTGGTCAAGCTGTGTCTCAATCT
CTTTCTTTGTCATATAACAGCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_e02.b1 MSMg01no328_e02.b1 CHROMAT_FILE:
MSMg01no328_e02.b1 PHD_FILE: MSMg01no328_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:21 2005
         (329 letters)



>mm_chr11_26834618_26835346
          Length = 729

 Score =  617 bits (319), Expect = 0.0
 Identities = 322/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctgtggaaagctattataaatgtgacttccctgtgacttcctccctagtatttag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgtggaaagctattataaatgtgacttccctgtgacttcctccctagtatttag 266

                                                                       
Query: 67  aataggctccctgaaggggctgtagtctctcaagattctatgaaaagtagacataactat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aataggctccctgaaggggctgtagtctctcaagattctatgaaaagtagacataactat 326

                                                                       
Query: 127 ttgtaatgttaaattcctgtgttcataggaatgcattgctctgcttgagtacaatctaag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgtaatgttaaattcctgtgttcataggaatgcattgctctgcttgagtacaatctaag 386

                                                                       
Query: 187 agttcagtagcttaacttaatctttggggaggaaatttactctggccattaaaccttaca 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 387 agttcagtagcttaacttaatctttggggaggaaatttactctggccattaaaccttaga 446

                                                                       
Query: 247 aggctagagtactgtagaagctactaaactgattttagagcagtaccatgtctgtattaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aggctagagtactgtagaagctactaaactgattttagagcagtaccatgtctgtattaa 506

                                  
Query: 307 tgtggtgagaaaatctctatggc 329
           |||||||||||||||||||||||
Sbjct: 507 tgtggtgagaaaatctctatggc 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)