BAC Information

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BAC

Clone NameMSMg01-328J24
Chromosome11 (Build37)
Map Location 97,186,848 - 97,187,109
singlet/doubletsinglet
Overlap geneMrpl45
Upstream geneHoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490
Downstream geneGpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328J24.T7 (MSMg01no328_j24.b1)MSMg01-328J24.TJ (MSMg01no328_j24.g1)
ACCAG445675AG445676
length732737
length of high quality
(start - end)
96 (113 - 208)247 (82 - 328)
definitionCHROMAT_FILE: MSMg01no328_j24.b1 PHD_FILE: MSMg01no328_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:49 2005CHROMAT_FILE: MSMg01no328_j24.g1 PHD_FILE: MSMg01no328_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCG
CGGAATTCCATTAAGCATGACTTCGTGTGTGTGTGTGTGCGTGTGTGTGA
GTGTGTGTACTTCTTTCAGACTCTCCCCCAGCATTCATGTTCTCCTGTGC
ATCACAATAGGTGTTAAGCTGGCTGGCTGCTGTAGCTGGAATTACACACT
ATCCAGGCAGCCACAGTTGATGAGATCTGAAGCTAAAGGAATGGATCTCC
AGTTTGGAAAGTTGCCATGCCCGAGCACAGCACATGAAAATGCTCAAGAC
CCATCAACTCCAGCTCCTTTCATTTTATCTTATTAATTATAAACAAGACT
GACAGAGAAGTACAGGTCTCCAGGAAACACTCCTGGGAACATGCCTGGCT
AGGTTTTCTTTGGACCCAGTATGCACCCCCATCTGTTACTAGATTCTTAA
CCAAGGAATTTTCATCTTCACTTAGCACTTATAAGAATGCTAAACATAGT
GTGATAGACCTGCCTACTATACTATAGCTCTTTGACGCCCATTTCTCTTC
CTGGTTGTAGCCTTCCGATTTCTGTGGTATCTAATCATAAGACTTGTGTT
TTTGGAAAAGGTTATCCTCCTGAAACATATTTCCCATTCCACTATCCCTC
CGTTTTTAACTTCTATTTAGGCTATTTCTTTCCTGAATATCCCCTGGATT
ATCAGCAAGTTCCTCCCCACCTCTTTACACAG
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGGTCAGCCATCTCATCTT
TCTAAGAATGAAAACCTACCGGAAAACAGTGTTCAGTTACCAAGGTATGA
AGCCGGTCATGGTCTGAGCTAGAGAGAGAGAGAGAGTTTTAGCATTGATT
CCTACTTTATGGTACCTTCTGTAAAACCTGAAAACGGGCTGAAAAGAAGG
CTTGGTGAGTAAAGGAGCCTGCCACCAAGCCTGCAGGCGGTGTTCAGTCC
CCAGAACCACAGGAAAAAAACTGACACTTCTTTTTTTAGAGAGATGGCTC
CACAGCTAAGAGCACTGTCTGCTCTTCCAGAGGACGTGGGTTTGAATCCT
ACTTGGTGGCTCACAACCATCTGTTCCCCCCCGCCCTCTTCTGGACTCCA
AAGACAATGCATGCAAATGGTATACAGATATACCTGCAAGTAAAACACTC
ATACATAAGATATGCACAAATAATTCATTACCAAACAAATCTAAATTGAT
TCCTGACATTGTCTCTGACCTCTACATGTGTGTCATCTGTATTCCTTCTC
ATATTTTCCCCTATTAAATCAGGTTTTTTTTAGCACCATTACTTCTCTTT
TTTCGTCGACTTTTGCCTAGCGTCCCCTTATTCTCTTTTCCCTCTTTCTT
CTTTGCAAGCTTGTTATCATCCCCGGTATCTCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_j24.g1 MSMg01no328_j24.g1 CHROMAT_FILE:
MSMg01no328_j24.g1 PHD_FILE: MSMg01no328_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:50 2005
         (247 letters)



>mm_chr11_97186804_97187451
          Length = 648

 Score =  398 bits (206), Expect = e-115
 Identities = 241/262 (91%), Gaps = 15/262 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtcagccatctcatctttctaagaatgaaaacctaccggaaaacagtgttcagttacc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 306 tggtcagccatcccatctttctaagaatgaaaacctaccggaaaacagtgttcggttacc 247

                                                                       
Query: 61  aaggtatgaagccggtcatggtctgagct---------------agagagagagagagag 105
           |||||||||||||||||||||||||||||               ||||||||||||||||
Sbjct: 246 aaggtatgaagccggtcatggtctgagctagaaaagagagagagagagagagagagagag 187

                                                                       
Query: 106 ttttagcattgattcctactttatggtaccttctgtaaaacctgaaaacgggctgaaaag 165
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 186 ttttatcattgattcctactttatggtaccttctgtaaaacctgaaaaggggctgaaaag 127

                                                                       
Query: 166 aaggcttggtgagtaaaggagcctgccaccaagcctgcaggcggtgttcagtccccagaa 225
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 126 aaggcttggtgagtaaaggagcctgccaccaagcctgcagatggtgttcagtccccagaa 67

                                 
Query: 226 ccacaggaaaaaaactgacact 247
           ||||||||||||||||||||||
Sbjct: 66  ccacaggaaaaaaactgacact 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space:   152082
Effective search space used:   152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)