Query= MSMg01no328_k01.b1 MSMg01no328_k01.b1 CHROMAT_FILE:
MSMg01no328_k01.b1 PHD_FILE: MSMg01no328_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:50 2005
(375 letters)
>mm_chr11_5112186_5112961
Length = 776
Score = 648 bits (335), Expect = 0.0
Identities = 366/377 (97%), Gaps = 3/377 (0%)
Strand = Plus / Minus
Query: 1 gaattcagaatatttattctccggcctttatggaaaaggttttctgaaatctgctgtgta 60
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaattcagaatatttatt-tctggcctttatggaaaaggttttctgaaatctgctgtgta 518
Query: 61 tcagtagaatcatctaaaaacagacctacacatgtacacaacagatgtacatggttgact 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 517 tcagtagaatcatctaaaaacagacctacacatgtacacaacagatgtacatggttgatt 458
Query: 121 ttatgaaagtctcaagtcatcagtgaatggttgtcttcaagtactcttgaggaggagaga 180
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 457 ttatgaaagtctcaagtcatcagtgaatggttgtcatcaagtactcctgaggaggagaga 398
Query: 181 gtctaa--ctctgtgaagaaaagtgagtcttgttttgcatcataggttaggcaaagattg 238
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtctaactctctgtgaagaaaagtgagtcttgttttgcatcataggttaggcaaagattg 338
Query: 239 actttaaactaaactacagaaaaaacttactataagaatgttataataatatacattcag 298
||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 337 actttaaactaaactacagaaaaaagttactataagaatgttataaaaatagacattcag 278
Query: 299 agcaatagacttcacaacttaaaaatgaaccaataaattggcagtcagttgagttttagc 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 277 agcaatagacttcacaacttaaaaatgaaccaataaattggcagtcagtcgagttttagc 218
Query: 359 aaaattgcccagatcat 375
|||||||||||||||||
Sbjct: 217 aaaattgcccagatcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space: 280722
Effective search space used: 280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_k01.g1 MSMg01no328_k01.g1 CHROMAT_FILE:
MSMg01no328_k01.g1 PHD_FILE: MSMg01no328_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:50 2005
(251 letters)
>mm_chr11_4936956_4937606
Length = 651
Score = 478 bits (247), Expect = e-139
Identities = 250/251 (99%)
Strand = Plus / Plus
Query: 1 tattcctcagcctgctaagggggcagtcaggacagtggcaggtgagaacttatttcgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcctcagcctgctaagggggcagtcaggacagtggcaggtgagaacttatttcgtac 260
Query: 61 tgtcaggtcaggacagtttcttcagtggaacaccagccatatctcctgccaggaaggaca 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgtcaggtcaggacagtttcttcagtggaacaccagccatatctcctgcaaggaaggaca 320
Query: 121 gactgtaacagccaagaagagttcaggtggctgtggccaggatccagaatgctgttggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgtaacagccaagaagagttcaggtggctgtggccaggatccagaatgctgttggat 380
Query: 181 ctcaactctgaccttggcttgtcatggtgctggcaggggtcacctatcttcatcagtatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaactctgaccttggcttgtcatggtgctggcaggggtcacctatcttcatcagtatt 440
Query: 241 gcctttggcct 251
|||||||||||
Sbjct: 441 gcctttggcct 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
