BAC Information

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BAC

Clone NameMSMg01-328L11
Chromosome11 (Build37)
Map Location 66,587,192 - 66,587,528
singlet/doubletsinglet
Overlap genenone
Upstream geneMap2k4, Zkscan6, Dnahc9, Gm879, LOC668323
Downstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328L11.T7 (MSMg01no328_l11.b1)MSMg01-328L11.TJ (MSMg01no328_l11.g1)
ACCAG445743AG445744
length739728
length of high quality
(start - end)
249 (68 - 316)337 (71 - 407)
definitionCHROMAT_FILE: MSMg01no328_l11.b1 PHD_FILE: MSMg01no328_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:57 2005CHROMAT_FILE: MSMg01no328_l11.g1 PHD_FILE: MSMg01no328_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCTTCTTGCATACCCAGGACCTCAGCATCCCCTGAAAACCCTACCTA
CTCTTAGGGTTTATATAACCCTTGTTACCTCCAGTAAAGGATACTGTTTT
GCTGGAAAACATCTCCAGAGAAGGCTATTTCTCCTGGACTTGTGCTGACC
AAGATCCTGCTAACCCACCCGCCTTCCAGTCCAGCCTGATGTGCAATGGT
GCCTGGATGTATATAGGGGAAAAGCAGACCCAGCCAGCAGACCAGGACAT
AAACAAAGCCCAGGAGAGTAATAGACAATCCCACAATCCTCCATTATATC
ACAATGACTCAAAGACATGAATTGGACTTTCTAATCCATCAAAAAGTTCT
CTCTCTTTCCAGAAGCACCACCCTAGGACCTAGCCTTTAACACTTGGGCA
AGAAACAAGGTCACACTGTCTGTGTGGGCATCTCATAGACCAATGAAATG
AATATATAAAGTGACCATTCAAGATCTGGCCTCCAGGACCAGCAGCTTTG
CTAACATGTGTAGTGATGTACCCACTAGGCTCTGGGTTAACACCTCATCT
ATAGCCTTGTGTCTTTCAACTTAAACAGAATTTATACCCTTCTGCATTCT
CCCATATCCCCTTATTTTGACATTTCTTTTAATCATGATAGAACCTAACC
AGATGGTTCTCTACTCTTCATCATAAATACACATTTTCT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCATTGCTTACATTAATAACTAAGAAGCAA
AACCCAGTGCCTGAAAAATTCAACACTCAGGCACGGTCTCTAGGAAGGTG
GGGGTAAATAGAAGGGAATGAATATGTAACTGGAGAAATTGAAAGCTGAT
GCCTCTAAGAAATTGGAATTAAGGACATATTATAATTTAAGCCACAGAAA
ACTTTTTTTCAACAATAAACAAATTGATATGTAAATAAGCAAGGGAAAAT
GAATGGGATGAAGGAATTTTACTAGTGGAAAAATTGGTGTATTTTGGTCA
TTTTAAGAGGTGTTCCTGAAGAGGTACTTTTCAAGGATCTATTTAAATCT
TAAGTGGCTTAAACCATCAATCTCAGGCATAGAATATCACAATTTTAAGG
TTGAACAGTCAGATATGAGGATTTTACAAACAGACCCGACAATACAAAAA
GTTCACTCATTGAAAAATGACTCTTTTCCATCAATTGTGACTTCCTTTGC
AATTTTCTTGTCAGAAGAAAATGCAGAGATGCATTCTGTAAATTCATATA
CAGGGGCTACTGCATGCTTAAATACAGAGATTATGTCTGATAATTAACAT
ACTGGAACTCTTGGGCTGATACCCTCAGTCCTTTTGTTTGGACTCCGCTG
TCCTTGGCGTCTTATTTGTAGGCATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_l11.g1 MSMg01no328_l11.g1 CHROMAT_FILE:
MSMg01no328_l11.g1 PHD_FILE: MSMg01no328_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:57 2005
         (337 letters)



>mm_chr11_66586992_66587728
          Length = 737

 Score =  652 bits (337), Expect = 0.0
 Identities = 337/337 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattgcttacattaataactaagaagcaaaacccagtgcctgaaaaattcaacactcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tcattgcttacattaataactaagaagcaaaacccagtgcctgaaaaattcaacactcag 478

                                                                       
Query: 61  gcacggtctctaggaaggtgggggtaaatagaagggaatgaatatgtaactggagaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gcacggtctctaggaaggtgggggtaaatagaagggaatgaatatgtaactggagaaatt 418

                                                                       
Query: 121 gaaagctgatgcctctaagaaattggaattaaggacatattataatttaagccacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaaagctgatgcctctaagaaattggaattaaggacatattataatttaagccacagaaa 358

                                                                       
Query: 181 actttttttcaacaataaacaaattgatatgtaaataagcaagggaaaatgaatgggatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 actttttttcaacaataaacaaattgatatgtaaataagcaagggaaaatgaatgggatg 298

                                                                       
Query: 241 aaggaattttactagtggaaaaattggtgtattttggtcattttaagaggtgttcctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaggaattttactagtggaaaaattggtgtattttggtcattttaagaggtgttcctgaa 238

                                                
Query: 301 gaggtacttttcaaggatctatttaaatcttaagtgg 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gaggtacttttcaaggatctatttaaatcttaagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)