BAC Information

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BAC

Clone NameMSMg01-329O07
Chromosome11 (Build37)
Map Location 54,530,745 - 54,688,842
singlet/doubletdoublet
Overlap geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1
Upstream geneIl5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6
Downstream geneGpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329O07.T7 (MSMg01no329_o07.b1)MSMg01-329O07.TJ (MSMg01no329_o07.g1)
ACCAG446592AG446593
length773734
length of high quality
(start - end)		354 (46 - 399)526 (75 - 600)
definitionCHROMAT_FILE: MSMg01no329_o07.b1 PHD_FILE: MSMg01no329_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:30 2005CHROMAT_FILE: MSMg01no329_o07.g1 PHD_FILE: MSMg01no329_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,688,493 - 54,688,842)(54,530,745 - 54,531,270)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCCATTATTGCTGACCCCACAATGGTACCCTCATTACATTAATG
AATCTGCTTTGACATATCACAGTCCCACAAAGTTCAGAGTCTGGGTTCAC
TCCTATTTTCATTTCTCTTAACTTTATGCTTACAAATGGATGTGCTTATA
TGTGTTTAGTCAGTTGGCAATATGGTTACTGTATGCTTACTCTTATTGTT
GGTGTTTGTTGTGTGAGTCAGGGCCATGTACATTCCATGGGTGGTGATGT
ATGTGTACTTAAATCAACCCACCCTGATATTTTCACAGTATTTTCAATGC
CCTAAAACACTTTGGCCATTTGCCCATTTTTAAATTTGTGGTTGTTTTTT
GCTTTAAAAAAACATTGCCCCCCCTTTTGTTGTTGTTTTGAGAAAGTTAT
ATCTCTGTCAAATCCTGAATGCTATATAACACCTATTTTTCATACTAGCT
GTTCTCTCACCTATTAATAATTTACTGTCCTTTTCCCCCTTATTGCTGTC
AACTAATCGCTCTTTTTTACACCTCGTCTTCTTTTCCTGCCTTCTTTCTT
TTCTAATTTACTTTTTCTTCATTATTAAATTAATTATTGTTCTTTACACT
ATAACACAAATTTTTCTCTCACTACTTTCTCCTGATATTTTTCAACTTCT
TATATCTATTATATCATATTTTCATATCATTGACTTTATATAACACAAAT
TTTTTCCTCTATTTATTAATGTG

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGAA
CTCAGAAACCCACCTGCCTCCTAAGTGCTGGGATCAAAGGTGTGAGCCAC
CACTGCCCAGCTTAAAAAAACTTTGAAACAAAAGAGTGACAAGTTGTCTG
CACCCATGGGCTGTCAGTGGAGAATGCTAGAAGATTCTCTATATAAGGTG
AGTGAAATTTTATTAGAAGAAAAATCCAAACAAAGACTAAAAGAAAACAT
TTATTGAATCAAAATCAATACTTTCCTTTTTTTAATATCTACAAGCCAAC
AGTGAGCTCACTTTATTCAAGAATGAACACAATGTACAAAAAAAGTATGC
TTAGATTATAAAAATACGACCACCTTGTCTTCTGGTGCTGAGCACAAGTC
ACTGAGCAGATCAGGCCACTGCTCTACCCTAGCAGCTCCATTTAATGACC
ACAAGGAAGCTAATGGACAAACTCTCCAGGCCCACTGGAGAAGCTGTGCC
CAGCACACTGCTGCAATCTGCGGTATCTCTTGCTTACTAGTTGTTACCAT
GTATTTCAGAGAAGTATTAACTATATAATAAATTCTTGGTACAAAATCCT
ATTAGCTCCAATTTAAAAATGAGATGTGTGATTGGGGGAACAAAGGAGTT
CTCAAGTTTACAATCCCATGTGCGCAGGTGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_o07.b1 MSMg01no329_o07.b1 CHROMAT_FILE:
MSMg01no329_o07.b1 PHD_FILE: MSMg01no329_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:30 2005
         (354 letters)



>mm_chr11_54688307_54689060
          Length = 754

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccccattattgctgaccccacaatggtaccctcattacattaatgaatctgctt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaattcccccattattggtgaccccacaatggtaccctcattacattaatgaatctgctt 477

                                                                       
Query: 65  tgacatatcacagtcccacaaagttcagagtctgggttcactcctattttcatttctctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgacatatcacagtcccacaaagttcagagtctgggttcactcctattttcatttctctt 417

                                                                       
Query: 125 aactttatgcttacaaatggatgtgcttatatgtgtttagtcagttggcaatatggttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aactttatgcttacaaatggatgtgcttatatgtgtttagtcagttggcaatatggttac 357

                                                                       
Query: 185 tgtatgcttactcttattgttggtgtttgttgtgtgagtcagggccatgtacattccatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgtatgcttactcttattgttggtgtttgttgtgtgagtcagggccatgtacattccatg 297

                                                                       
Query: 245 ggtggtgatgtatgtgtacttaaatcaacccaccctgatattttcacagtattttcaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggtggtgatgtatgtgtacttaaatcaacccaccctgatattttcacagtattttcaatg 237

                                                             
Query: 305 ccctaaaacactttggccatttgcccatttttaaatttgtggttgttttt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ccctaaaacactttggccatttgcccatttttaaatttgtggttgttttt 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no329_o07.g1 MSMg01no329_o07.g1 CHROMAT_FILE:
MSMg01no329_o07.g1 PHD_FILE: MSMg01no329_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:30 2005
         (526 letters)



>mm_chr11_54530545_54531470
          Length = 926

 Score =  978 bits (506), Expect = 0.0
 Identities = 521/526 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctggcctcgaactcagaaacccacctgcctcctaagtgctgggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctggcctcgaactcagaaacccacctgcctcctaagtgctgggat 260

                                                                       
Query: 61  caaaggtgtgagccaccactgcccagcttaaaaaaactttgaaacaaaagagtgacaagt 120
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 261 caaaggtgtgagccaccactgcccggcttaaaaaaacttttaaacaaaagagtgacaagt 320

                                                                       
Query: 121 tgtctgcacccatgggctgtcagtggagaatgctagaagattctctatataaggtgagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctgcacccatgggctgtcagtggagaatgctagaagattctctatataaggtgagtg 380

                                                                       
Query: 181 aaattttattagaagaaaaatccaaacaaagactaaaagaaaacatttattgaatcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattttattagaagaaaaatccaaacaaagactaaaagaaaacatttattgaatcaaaa 440

                                                                       
Query: 241 tcaatactttcctttttttaatatctacaagccaacagtgagctcactttattcaagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatactttcctttttttaatatctacaagccaacagtgagctcactttattcaagaat 500

                                                                       
Query: 301 gaacacaatgtacaaaaaaagtatgcttagattataaaaatacgaccaccttgtcttctg 360
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 501 gaacacaatgtacaaaaaaagtatgcttagattataaaaatacgtccatcttgtcttctg 560

                                                                       
Query: 361 gtgctgagcacaagtcactgagcagatcaggccactgctctaccctagcagctccattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgctgagcacaagtcactgagcagatcaggccactgctctaccctagcagctccattta 620

                                                                       
Query: 421 atgaccacaaggaagctaatggacaaactctccaggcccactggagaagctgtgcccagc 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgaccacagggaagctaatggacaaactctccaggcccactggagaagctgtgcccagc 680

                                                         
Query: 481 acactgctgcaatctgcggtatctcttgcttactagttgttaccat 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acactgctgcaatctgcggtatctcttgcttactagttgttaccat 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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