BAC Information

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BAC

Clone NameMSMg01-330K23
Chromosome11 (Build37)
Map Location 69,723,092 - 69,723,377
singlet/doubletsinglet
Overlap gene0610025P10Rik
Upstream geneOdf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik
Downstream geneGps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330K23.T7 (MSMg01no330_k23.b1)MSMg01-330K23.TJ (MSMg01no330_k23.g1)
ACCAG447174AG447175
length754790
length of high quality
(start - end)		---286 (129 - 414)
definitionCHROMAT_FILE: MSMg01no330_k23.b1 PHD_FILE: MSMg01no330_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:27 2005CHROMAT_FILE: MSMg01no330_k23.g1 PHD_FILE: MSMg01no330_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACACACCCTATATTATCTTAAAAAAATTATAATTTTACTAAATAAATTT
ATTATATTATTATTTTTTTATTTAAAAAAAAAAATAAAATAATATATTTA
TTTATTTAAATTTAACTATTTATAATCTTTATATTAATTTTATTAATTTT
ATTTTTAATGTTTCCTTATTTACTAAANNNNNNNNNNNNCCTTAANNNNT
TATATTTTAATTTATTTATTATTTTGNNNNNNNNTTTATTTTTTTTNNTT
TGATATAGTGTTTGTATACTTTNTNTNNTTTAAAAAANAAANCCNNNCCA
TAATATTACCNNNNNNTANCTTTCTTTCCCCTCTATAAAATTTTGCGGCC
CGTCTTAATACTTACTTTCACCTAATATGGGGTTACTACAAACAAACAAA
AGTTTTATTTTTTNNTGGAAAAATTTATTTTTCTCTCAACAAAAAAAAAA
AAGGGCCATTTTTTTTTTTTGGTTTTTCCCCCCCACTTATTTTTTAAAAA
ATGGAGTCTCTCTTATCCCCGTGTTTTTTTACCCCCCCCCCCCTTTTTTT
ATCCCCTTTTCTNNTTTTATTTCCTCTTCTCTATTTTTCCCCCCAAAAAT
TATTTCTTTTTTTTTTTTCCCCCCCTATAGTTTTTTTTTCTTTTATAATA
CCCAACCCCTTTTTATATATAAATTTTTCCCCCCTTCCTCTCTTATTAAA
AAAATTCTCTACTTTTCCCCTCCTCCTCCCTTTTTATTTACTTTTATTTT
TCTT

TTTTTTTCCTTTTTTTTTTTNTTTTTTTTTCTTTCTCTCTTTTATANNAT
TCACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAGAACCATGGGAAGAATA
TCCTCTTATCCAACGGGAACCGCACAGCCACTCGGGTGGCCAGCTATAAC
CAGGGCATTGTTGTCATCAGTCAGCCCCTGGTGCCCCATATGCTTGTTCA
GGTGTGCCTTTCTTCCTGCCTAGCTTATTACTACTCCAGGGTGAGAGGCC
CTTTCTCTTGCAAATGAAAAGATAGGTAAGAAATTAGCCAGCTGACCTAG
TAGTGGTGGCACATGCCTTTATTCCCAGTACTTGGAAGCAGAGAGACGCA
GGCGGATCTTTGTGAGANNGTGGCTCGAAAGCATANACCATGAGTTCTAG
GATAGCCAGGCCTATGTAGAGAAATGCCACAATAGAACAAAAAACCAAGC
AGAGGAGCATAAGCCAGTTGAAGGAAGTCTTTAGGAACAGACCAGGGTTC
AAAGAGAAAGGATGTTGGGGGTACAGTTCAGTGTAGAACATTTGTTTGAC
GTGTACAAGGGCCTGGATTCTGTTCCCTGCAGCAGTATAGACAGGGAAGG
AGATATCAGAGTTGATAGTTTCTGCTCTCTACAAATATCAAGAAGGGCAG
TGTATCAGGCAGGTCACACTCTGTACAGAGACTGATGTGGGTAGGTGGGT
GGCCTCTGCCTGATAGCTGTGCATGTAAAATATCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_k23.g1 MSMg01no330_k23.g1 CHROMAT_FILE:
MSMg01no330_k23.g1 PHD_FILE: MSMg01no330_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:27 2005
         (286 letters)



>mm_chr11_69722892_69723577
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggagaaccatgggaagaatatcctcttatccaacgggaaccgcacagccactcgggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggagaaccatgggaagaatatcctcttatccaacgggaaccgcacagccactcgggtg 260

                                                                       
Query: 61  gccagctataaccagggcattgttgtcatcagtcagcccctggtgccccatatgcttgtt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccagctataaccagggcatcgttgtcatcagtcagcccctggtgccccatatgcttgtt 320

                                                                       
Query: 121 caggtgtgcctttcttcctgcctagcttattactactccagggtgagaggccctttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtgtgcctttcttcctgcctagcttattactactccagggtgagaggccctttctct 380

                                                                       
Query: 181 tgcaaatgaaaagataggtaagaaattagccagctgacctagtagtggtggcacatgcct 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tgcaaatgaaaagataggtaagaaattagccagctgagctagtagtggtggcacatgcct 440

                                                         
Query: 241 ttattcccagtacttggaagcagagagacgcaggcggatctttgtg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattcccagtacttggaagcagagagacgcaggcggatctttgtg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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