BAC Information

Click to search

BAC

Clone NameMSMg01-331G03
Chromosome11 (Build37)
Map Location 15,394,422 - 15,394,726
singlet/doubletsinglet
Overlap genenone
Upstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream geneLOC665660, Vstm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331G03.T7 (MSMg01no331_g03.b1)MSMg01-331G03.TJ (MSMg01no331_g03.g1)
ACCAG447692AG447693
length736732
length of high quality
(start - end)
312 (35 - 346)643 (68 - 710)
definitionCHROMAT_FILE: MSMg01no331_g03.b1 PHD_FILE: MSMg01no331_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:16 2005CHROMAT_FILE: MSMg01no331_g03.g1 PHD_FILE: MSMg01no331_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGATCCGCGGAATTCACAT
ATCTTCCTCAATTGTCATTATAATACTCTTTCTTAAGATTGTATTTCATA
CTATTGGTGCATACACTAGATAGAATCCACAATCCTTTTTTTCCTGAAAG
TCAAATTGTTCTTAAGAGAAACATGTTTCCTACTGTATTAACACTATATA
ATATCCTTTAATACTACACTTCTTATAGGTCATACCTTTCAAATGTTTGA
ATTGCTTTATTAATTCATTCTTATTGCTGATAGGCAGAGTTTAAATTTAT
ATGCAAATGTCGCAATTTCTAAAGGTCTGAATTTATCTTCTTTGCCACTG
CGTGACTTTGCCTCTCAGAACATGCTTATCCCACAGGAATCACAATGACT
TTGCTCACCCACCCTTAGTATAATATTCGAACAGGATTTTTTGAATAATT
ATTAACATGTATGATTAGTCTCATGTCTCATACCTGTTTTCCACAATGTC
ACTGTATAATATGTTTTATTCACTTTCAAGTTGTTATCCCATTATCCCCA
TATACAACATCTCGTTATTTTTTATTGCCATTCACTAATCTTTATTATTA
CGACGCATTTTACCAGCCACCCAACTCTGTTCCTTAACATTTGTTCTTTC
CTCCTTCCATAACTTTTCCTCATTTTCATACTTTCCATCTTATGCCCTTT
TCATTTTTCAATTACCTCCATCACCCACTTATTTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTCTGGAATTCCTGAAATCACAAACAAACAGGTGAAGGAG
TTGAACAAAACCATCCATGATCTAAAATCTGAAGTAGAAACCATAAAGAA
ATCACAAAGGGAGACAACTGTGGGAATAAAAAACCTAGAAAAGAAATCAG
AAGCCACAGATACAAGCATCACAACAGAATACAAGAGATAGAAGAGATAA
TCTCAGGTGCAGAAGATTACAAGGAAAACATTGACACAACAATCAGGTAA
AATGCAAAATACAAAAAGATTCTAACTCAAAACATCCAGGAAATCTAGCA
CACAACAAGAGCAAACCTAAGGATAGTAAGTATAGATGAGAATGAAGATG
TTGAACTTATATGGCTAGCAAATACCTTCAACCAAATTATAGAAGAAAAC
TTCCCTAACCTGAAGAAAAAAATGCCCATGAACATACAAGGAGCCTACAG
AACTCCAAATAGTTTGAACCAGAAAAGAAATTCCTCTCATCACATAATAA
TCAAAACACCAAATGTAGAAAACAAAGGAAGAATATTAAAAGCAGTAAGG
GGAAAAGGTCAAGTAACGTATAAAGGTAGACCTATTAAAAATACACCAGA
CATCTAACCAGAGAATATGAAAGCCAGAAGATCCTGGAAGACATCGTACA
GACCCTAAGAAAAACAAATGCCAGCTCAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_g03.b1 MSMg01no331_g03.b1 CHROMAT_FILE:
MSMg01no331_g03.b1 PHD_FILE: MSMg01no331_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:16 2005
         (312 letters)



>mm_chr11_15394216_15394926
          Length = 711

 Score =  530 bits (274), Expect = e-155
 Identities = 298/306 (97%), Gaps = 1/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcacatatcttcctcaattgtcattataatactctttcttaagattgtatttcata 66
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcacatatcaacctcaattgtcattataatactctttcttaagattgtatttcata 266

                                                                       
Query: 67  ctattggtgcatacactagatagaatccacaatcctttttttcctgaaagtcaaattgtt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctattggtgcatacactagatagaatccacaatcctttttttcctgaaagtcaaattgtt 326

                                                                       
Query: 127 cttaagagaaacatgtttcctactgtattaacactatataatatcctttaatactacact 186
            ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 327 tttaagagaaacatgtttcctactgtattaacactatataat-tactttaatactacact 385

                                                                       
Query: 187 tcttataggtcatacctttcaaatgtttgaattgctttattaattcattcttattgctga 246
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 386 tcttatagggcatacctttcaaatgtttgaattggtttattaattcattcttattgctga 445

                                                                       
Query: 247 taggcagagtttaaatttatatgcaaatgtcgcaatttctaaaggtctgaatttatcttc 306
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaggcagagtttaaatttatatgcaaatgtcgcaatttctaaaggtctgaatttatcttc 505

                 
Query: 307 tttgcc 312
           ||||||
Sbjct: 506 tttgcc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)