BAC Information

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BAC

Clone NameMSMg01-331J05
Chromosome11 (Build37)
Map Location 49,648,803 - 49,825,216
singlet/doubletdoublet
Overlap geneGfpt2, Mapk9, Rasgef1c
Upstream geneTrim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073
Downstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331J05.T7 (MSMg01no331_j05.b1)MSMg01-331J05.TJ (MSMg01no331_j05.g1)
ACCAG447838AG447839
length728733
length of high quality
(start - end)		655 (74 - 728)561 (76 - 636)
definitionCHROMAT_FILE: MSMg01no331_j05.b1 PHD_FILE: MSMg01no331_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:29 2005CHROMAT_FILE: MSMg01no331_j05.g1 PHD_FILE: MSMg01no331_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,824,562 - 49,825,216)(49,648,803 - 49,649,363)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCGCGG
AATTCTCCTGATTTACTCTCCTGCTTACAGTTCCTCTAAGTTTCAGCCAT
CCCCTTACTCTCTCTGCTTCTGGCTGCCCGCCCCCTCCGTCTCCTCCTCA
CTCTGTGTCTCACTCCCTTCTGGAACCTGCTCTCTAAACCATGGCAGACC
ACTTCTCTCGAGCCTCACTTCTCTTTAGGAGCCACCTGCTCAGTCTCTGT
CCCTCTCACTGGCTCGCTGGAGCCTACCCTACAGAAGTCCTGCAGGTACA
GCAGGCAGATTCTTTATGCCCTCCTGGGCCTCTGTGATATTGCCGTCTTC
CCTCTGGCAGCACTCCTGTTCATGATCCCTTTCCCTAAGCCTTCCCTGCC
TCTGCTCTACTCTGTCTCCAAAGCATGTCTCCCCCACACCCTCTCTCTTG
GTTCCCCCCTGTCTTTAACTCATTGACTCTTCCCTCAGCTGCCTTCTCTA
ACTTCTTTTCCTCTTCAGACTCAGAGAATCCATTAAGGCACACTGTCTTA
CAGCAAACAGCTTGACTTCAGTATAAACCAGACAACCATTCTCAATGACC
AGGAAATGGCACACTTGAATTCCAAATTCACAGATTGTAACAACTGCCAC
CATGCATGCAAAGGTCCAAAAGCACTTTCCTCGCCTCTAAGTTCTTTTAT
TTGCTCTCAAATGTCTCATATCTCCAAG

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTTTGCTCATGATTCTATTTTCA
TGGATTGTGAAGAGTTAGGAGTAGGTCAGGTCAAGGCATTTGTGAAGCTG
GTCAACAAATGGATGCTGAATGATGGTGCAAGGTGCAGTCACCTGACCAG
GAGAGGGGAAGAAAGACACCAAGAAGCACACCTGTCCTTTACACGTGGCA
TACACATGCCCTCACTGATAATGTCACCACGATAGCAGTGCTGACTCCAG
AAAATTCCAGAAGCTATACTCGGTGCAGGAGAGGGTTTGCTTCTTTCAGA
AACATGGTACTTTATGATCCCCTTTCTCTGCTTTAGGGTCGCCCAATCAT
ACTGTGTTCCAAGGATGACACCCACAGCTCCAAGTTTGCATATAAAACCA
TTGAACTTCCCCACACAGTGGACTGTCTCCAGGGTATCCTGAGTGTGATT
CCACTCCAGCTTCTGTCCTTCCACCTGGCTGTCCTCCGAGGTTATGATGT
AAGTCTAAAGTTTGCATAAGCACAGCAAAGGGTTGAAACAGAAAGCTAAA
GGTTCTTTCTTACCGATGTATTGTAGTTTTTTAAGGAGTTTGTACATAGT
TATGGTCTCAGGTTACCATTTCTATGCACAGATATGTCGTTGTGCTATTT
GTAATGCACAAGCTGCTTTTTTGCCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_j05.b1 MSMg01no331_j05.b1 CHROMAT_FILE:
MSMg01no331_j05.b1 PHD_FILE: MSMg01no331_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:29 2005
         (655 letters)



>mm_chr11_49824362_49825416
          Length = 1055

 Score = 1220 bits (631), Expect = 0.0
 Identities = 649/655 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttacagttcctctaagtttcagccatccccttactctctctgcttctggctgcccgccc 60
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 855 cttacagttcctctaagtttcagctatccccttactctttctgcttctggctgcccgccc 796

                                                                       
Query: 61  cctccgtctcctcctcactctgtgtctcactcccttctggaacctgctctctaaaccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cctccgtctcctcctcactctgtgtctcactcccttctggaacctgctctctaaaccatg 736

                                                                       
Query: 121 gcagaccacttctctcgagcctcacttctctttaggagccacctgctcagtctctgtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gcagaccacttctctcgagcctcacttctctttaggagccacctgctcagtctctgtccc 676

                                                                       
Query: 181 tctcactggctcgctggagcctaccctacagaagtcctgcaggtacagcaggcagattct 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tctcactggctcgctagagcctaccctacagaagtcctgcaggtacagcaggcagattct 616

                                                                       
Query: 241 ttatgccctcctgggcctctgtgatattgccgtcttccctctggcagcactcctgttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttatgccctcctgggcctctgtgatattgccgtcttccctctggcagcactcctgttcat 556

                                                                       
Query: 301 gatccctttccctaagccttccctgcctctgctctactctgtctccaaagcatgtctccc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 555 gatccctttccctaagccttccctgcctctgctctactctgtctccaaagtatgtctccc 496

                                                                       
Query: 361 ccacaccctctctcttggttcccccctgtctttaactcattgactcttccctcagctgcc 420
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 495 ccacaccctctctcttggttcacccctgtctttaactcatcgactcttccctcagctgcc 436

                                                                       
Query: 421 ttctctaacttcttttcctcttcagactcagagaatccattaaggcacactgtcttacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttctctaacttcttttcctcttcagactcagagaatccattaaggcacactgtcttacag 376

                                                                       
Query: 481 caaacagcttgacttcagtataaaccagacaaccattctcaatgaccaggaaatggcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 caaacagcttgacttcagtataaaccagacaaccattctcaatgaccaggaaatggcaca 316

                                                                       
Query: 541 cttgaattccaaattcacagattgtaacaactgccaccatgcatgcaaaggtccaaaagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttgaattccaaattcacagattgtaacaactgccaccatgcatgcaaaggtccaaaagc 256

                                                                  
Query: 601 actttcctcgcctctaagttcttttatttgctctcaaatgtctcatatctccaag 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 actttcctcgcctctaagttcttttatttgctctcaaatgtctcatatctccaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no331_j05.g1 MSMg01no331_j05.g1 CHROMAT_FILE:
MSMg01no331_j05.g1 PHD_FILE: MSMg01no331_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:29 2005
         (561 letters)



>mm_chr11_49648603_49649563
          Length = 961

 Score = 1031 bits (533), Expect = 0.0
 Identities = 554/561 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctttgctcatgattctattttcatggattgtgaagagttaggagtaggtcaggtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctttgctcatgattctattttcatggattgtgaagagttaggagtaggtcaggtcaag 260

                                                                       
Query: 61  gcatttgtgaagctggtcaacaaatggatgctgaatgatggtgcaaggtgcagtcacctg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gcatttgtgaagctggtcaacaaatggatgcagaatgatggtgcaaggtgcagtcacctg 320

                                                                       
Query: 121 accaggagaggggaagaaagacaccaagaagcacacctgtcctttacacgtggcatacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaggagaggggaagaaagacaccaagaagcacacctgtcctttacacgtggcatacac 380

                                                                       
Query: 181 atgccctcactgataatgtcaccacgatagcagtgctgactccagaaaattccagaagct 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgacctcactgataatgtcaccacgatagcagtgctgactccagaaaattccagaagct 440

                                                                       
Query: 241 atactcggtgcaggagagggtttgcttctttcagaaacatggtactttatgatccccttt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 atactcggtgcaggagagggtttgcttctttcagaaacacggtactttatgatccccttt 500

                                                                       
Query: 301 ctctgctttagggtcgcccaatcatactgtgttccaaggatgacacccacagctccaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 501 ctctgctttagggtcgcccaatcatactgtgttccaaggatgacaccgagagctccaagt 560

                                                                       
Query: 361 ttgcatataaaaccattgaacttccccacacagtggactgtctccagggtatcctgagtg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ttgcatataaaaccattgaacttccccacacagtggactgtctccagggtatcctgagcg 620

                                                                       
Query: 421 tgattccactccagcttctgtccttccacctggctgtcctccgaggttatgatgtaagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgattccactccagcttctgtccttccacctggctgtcctccgaggttatgatgtaagtc 680

                                                                       
Query: 481 taaagtttgcataagcacagcaaagggttgaaacagaaagctaaaggttctttcttaccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaagtttgcataagcacagcaaagggttgaaacagaaagctaaaggttctttcttaccg 740

                                
Query: 541 atgtattgtagttttttaagg 561
           ||| |||||||||||||||||
Sbjct: 741 atgcattgtagttttttaagg 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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