NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGTTTAAGGCTTGTTTCTTTTGACAAGGACATGTTAATTTTT
AGTATTAAAGGCTTTAACTTGTCACCTTTGGATGAAGAGGAAAGTTCAAA
TTTGTTACAGGTGTTTCATATAACAGCTTAAAAGTGAATGTTAGACTTGT
GAAAGGAATAGACAGGATCATTTTCTTAAACTATGAAATGAGGAGATGCT
TGCAGTATCCTCTTATCCAGTAGACAGTGCTGTGTTGTTGTTCTATAGGC
ACTGTGTCTTGGAATTTGGAAACATCCATGAAGGACACACGTGGATTTAT
AATCAGAGACCACATTGGTACTTTCAGTGTACTTGAACTAAAAATGTATC
CATTTTTCAGACACTTCACCGTGTTCTCCAGATTCATTTTTCTTAACACC
TCTAAGAAATTTGGACTTTCCTCTTCTTCCAAAGTGATTTCCCTAGCTGT
CTACTTTACAAGGGAGAATTCCACCTGCCATTGCAAATTGAATTCAAGGA
GGACAGTGAAATTCAGGACCAATCATTTATCAGGATGATAAAGTGACACA
GTTGCTAACTCAGTTCTCAGAACACTCCACGGTTTTCATTAATACCAATG
CTTGGGGGATAAAACAGCAAAATGATTGATTAAATCCTTTATTTTCCCTG
CATATGTAGACTTTCTCAG

NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTACTGGGTTGGTGAAGATTTCACAT
ATAAATTTTTTGAGGTTATCCTTATTGATCCATTTCATAAAGCTATCAGA
AGAAATCTTGACATCCAGTGAATCACCAGACCAGTCCACAAGCACAGAGA
GATGCACGTACTGACATCTGCTGGCCAAAAGAGCTTTGGCCTTGGGAAGG
GCCACAAGTTCCACCACACTATTGGTGGTTCTCAATGTGCAGCCTGGAGA
AGGTGCAATACTCTCCAGCTCCACCATTACCACTAATACACGTCATTTCT
GTAAAATTTGTATCCAATAAACAATTTAGAACAGCCTAAAAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAAGGGAAAAAAAGATATACAGAAAAACAAGGGCCATTGACTAGC
TCACAAACAAAAATATCTTTATTGGACATAGTGTTTCACTATCAAACCAT
ATAATATGTTGAGAAGACTGAAGTACTTGCCTTGGGACCAAGAAAACCTT
GAAGCTGAGAGTTGGGCTGAGTAATGCATAGGGACCTCTTGATAGAACAA
CCTTGGTGGTGGCCTAAGAATCTGAAGCTACCAAGTGCGAATTACAAGTG
AGTATTACTTATCTTACAN

Query= MSMg01no331_o06.b1 MSMg01no331_o06.b1 CHROMAT_FILE:
MSMg01no331_o06.b1 PHD_FILE: MSMg01no331_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:52 2005
         (672 letters)



>mm_chr11_92521240_92522315
          Length = 1076

 Score = 1210 bits (626), Expect = 0.0
 Identities = 659/672 (98%), Gaps = 4/672 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtttaaggcttgtttcttttgacaaggacatgttaatttttagtattaaagg 64
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcatgtttaaggtttgtttcttttgacaaggacgtgttaatttttagtattaaagg 264

                                                                       
Query: 65  ctttaactt----gtcacctttggatgaagaggaaagttcaaatttgttacaggtgtttc 120
           |||||||||    |||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 265 ctttaacttgtcagtcacctttggaagaagaggatagtccaaatttgttacaggtgtttc 324

                                                                       
Query: 121 atataacagcttaaaagtgaatgttagacttgtgaaaggaatagacaggatcattttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atataacagcttaaaagtgaatgttagacttgtgaaaggaatagacaggatcattttctt 384

                                                                       
Query: 181 aaactatgaaatgaggagatgcttgcagtatcctcttatccagtagacagtgctgtgttg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaactatgaaatgacgagatgcttgcagtatcctcttatccagtagacagtgctgtgttg 444

                                                                       
Query: 241 ttgttctataggcactgtgtcttggaatttggaaacatccatgaaggacacacgtggatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 ttgttctataggcactgtgtcttggaatttggaaacatccatgaaggacacacatggatt 504

                                                                       
Query: 301 tataatcagagaccacattggtactttcagtgtacttgaactaaaaatgtatccattttt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tataatcagagaccacattggcactttcagtgtacttgaactaaaaatgtatccattttt 564

                                                                       
Query: 361 cagacacttcaccgtgttctccagattcatttttcttaacacctctaagaaatttggact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagacacttcaccgtgttctccagattcatttttcttaacacctctaagaaatttggact 624

                                                                       
Query: 421 ttcctcttcttccaaagtgatttccctagctgtctactttacaagggagaattccacctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcctcttcttccaaagtgatttccctagctgtctactttacaagggagaattccacctg 684

                                                                       
Query: 481 ccattgcaaattgaattcaaggaggacagtgaaattcaggaccaatcatttatcaggatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccattgcaaattgaattcaaggaggacagtgaaattcaggaccaatcatttatcaggatg 744

                                                                       
Query: 541 ataaagtgacacagttgctaactcagttctcagaacactccacggttttcattaatacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ataaagtgacacagttgctaactcagttctcagaacactccacggttttcattaatacca 804

                                                                       
Query: 601 atgcttgggggataaaacagcaaaatgattgattaaatcctttattttccctgcatatgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atgcttgggggataaaacagcaaaatgattgattaaatcctttattttccctgcatatgt 864

                       
Query: 661 agactttctcag 672
           ||||||| ||||
Sbjct: 865 agactttatcag 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1076
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1066
Effective search space:   705692
Effective search space used:   705692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)