Query= MSMg01no332_f06.b1 MSMg01no332_f06.b1 CHROMAT_FILE:
MSMg01no332_f06.b1 PHD_FILE: MSMg01no332_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:39 2005
(527 letters)
>mm_chr11_36653601_36654527
Length = 927
Score = 971 bits (502), Expect = 0.0
Identities = 517/527 (98%), Gaps = 8/527 (1%)
Strand = Plus / Plus
Query: 1 aataaaanactgaaagttgaatgtctctagattgtaatctgacttcagtggtacgcactg 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaacactgaaagttgaatgtctctagattgtaatctgacttcagtggtacgcactg 260
Query: 61 catggttttagataacacattcctcttgcatggcagtcagtctcctcgtctgtagcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggttttagataacacattcctcttgcatggcagtcagtctcctcgtctgtagcatgc 320
Query: 121 tctttgttcctctcagagttggggagaaaaaataaatgtgctcattgtagtaaaagacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgttcctctcagagttggggagaaaaaataaatgtgctcattgtagtaaaagacat 380
Query: 181 ttcacgaactataaatcatgagataatattgatggtaattgtcttaaaaatcctactgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacgaactataaatcatgagataatattgatggtaattgtcttaaaaatcctactgat 440
Query: 241 aaaataatgctggtggttttcctgctgatgcttatactcattgtatatttcaaggatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaataatgctggtggttttcctgctgatgcttatactcattgtatatttcaaggatttg 500
Query: 301 gtcaggttctgaaatacccaatctactttatttcagcatatacaagtaagcatgcaattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaggttctgaaatacccaatctactttatttcagcatatacaagtaagcatgcaattg 560
Query: 361 ccacataaatacatacattcatacatacatatatatataaataaataaataaataaataa 420
|||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 561 ccacataaatacatacattcatacatacatgtata--------aataaataaataaataa 612
Query: 421 ataaataaatagaaatttaaaaaattgcactctttaagtccatggataacacttaattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ataaataaatagaaatttaaaaaattgcactctttaagtccatggataacacttaattct 672
Query: 481 atgaatatgcatgtggagaacaacccaagtcccacaggctgctggat 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atgaatatgcatgtggagaacaacccaagtcccacaggctgctggat 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_f06.g1 MSMg01no332_f06.g1 CHROMAT_FILE:
MSMg01no332_f06.g1 PHD_FILE: MSMg01no332_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:39 2005
(636 letters)
>mm_chr11_36817432_36818467
Length = 1036
Score = 1154 bits (597), Expect = 0.0
Identities = 612/617 (99%)
Strand = Plus / Minus
Query: 20 tgagacttcccaagtattacccatgatcacaccttatgttaatgtggaaagggaggtggc 79
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1036 tgagacttcccaagtattacccataatcacaccttatgttaatgtggaaagggaggtggc 977
Query: 80 ctgcttcagtgattcttccagaagcctctggagcgttggttacacagcagtgccacctag 139
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 976 ctgcttcagtgattcttccagaagcctctggagcgttggtttcacagcactgccacctag 917
Query: 140 catttctcacacaagctgctcacctttcattattatttttaaaatgagggtttattatta 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 catttctcacacaagctgctcacctttcattattatttttaaaatgagggtttattatta 857
Query: 200 ttattattttatttaaaatacaattaagcagaccagtcttcactccttccagaaatgtgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ttattattttatttaaaatacaattaagcagaccagtcttcactccttccagaaatgtgg 797
Query: 260 actgagattagtacaggatttattggcggcggcttgaaaccaacagtatttatttgaaaa 319
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgagattagtacaggaagtattggcggcggcttgaaaccaacagtatttatttgaaaa 737
Query: 320 cccttgtgattggaagggaattgatgtcaatgaagaaaggcgctgtgaaatctgctgaag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cccttgtgattggaagggaattgatgtcaatgaagaaaggcgctgtgaaatctgctgaag 677
Query: 380 agtttcaaatgtcagaactgcatattcatgagctgcgggcacctgtggccttgctgtgag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agtttcaaatgtcagaactgcatattcatgagctgcgggcacctgtggccttgctgtgag 617
Query: 440 gtcttcctgcagatcctgcctctgtggcactcagaatggcaatgaagatgctctttacag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtcttcctgcagatcctgcctctgtggcactcagaatggcaatgaagatgctctttacag 557
Query: 500 ggccttgatgtttatttgtttattgtataaacacatatataatatatgcatgtcttattc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggccttgatgtttatttgtttattgtataaacacatatataatatatgcatgtcttattc 497
Query: 560 tgcatgtacacacatacatatgatttatatgtttaggaaagaaacaaggagagaaaggac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgcatgtacacacatacatatgatttatatgtttaggaaagaaacaaggagagaaaggac 437
Query: 620 ccacaaaatgatttcag 636
|||||||||||||||||
Sbjct: 436 ccacaaaatgatttcag 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
