BAC Information

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BAC

Clone NameMSMg01-332F10
Chromosome11 (Build37)
Map Location 98,682,828 - 98,683,432
singlet/doubletsinglet
Overlap geneCasc3
Upstream geneLasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik
Downstream geneRapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332F10.T7 (MSMg01no332_f10.b1)MSMg01-332F10.TJ (MSMg01no332_f10.g1)
ACCAG448397AG448398
length1,3161,308
length of high quality
(start - end)
583 (131 - 713)606 (131 - 736)
definitionCHROMAT_FILE: MSMg01no332_f10.b1 PHD_FILE: MSMg01no332_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:41 2005CHROMAT_FILE: MSMg01no332_f10.g1 PHD_FILE: MSMg01no332_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCCGGTCTTTGGNNNACATTGGGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCCGAGCCAAAGCGGGTCCTTCACTAACCCTCGATGAGTT
CTAACTGTGAGAACTGCCCCTTAAAAACTGGAGAAGCCAAGGCCTTGCCA
TCGTGAGGTGTCCCGGGATGACGGGGACATACAGCCGTGGAAAAGGTTCA
AAGGCTCAGATGTTAGTGGCTTTTAAATAAGTGTTTGTTACAGTTTTCCT
CTTAACCCAACTAGCTCTCAAATGATTAAGACTGGATTATTATATTTAAC
AAGCTTGAAGGGCACAACAACTGAGCAGTGGTATTCCACTTTAATCCTCT
AAACTACGAATCTGTACCTCCCAGGCAGAATCCCAGAGATACCTGCTGGC
TCTCTGGGCTCCAAGGGTTTTCTCACCGTGTCTCCGAGACTCTCTCTCCC
CTTGTCCAGTCCCCACTTCTTTCTCCATCCCTCCTTTCCTGGCTGGGAGG
GAAGTTCAGCCCTATTGGCTGATCAGCTCTTATTGACAAGTCAGAGAATA
AATGGGAAACGAAGCCCACACAGCATTGAGGCAGGAGACACTTAGAATAA
GCATTCCAATACCCTGTCTGCATTGCAACCAGACACGGAGGCAGAGACGT
CGGCATTTGAATATAAAGATAATTTTTACAGAGTATGCACATAACATTGT
GCCTATACTCAGGAGCCGCGCAGGTTTGACGATGGCTACAGAAGGACCCG
AAATGCTGGAGGACTCCCACCCCTTCCCCACCCAAGCCCCTGACCCGACT
CGGGAGCCGGCCCTTCTGCCCAGGCCTGTACATTTTGCATGGGACTCTCT
TACTGAATGGGACACTTACTGGACCGAGTCCACGAGAACAGGGAGAGCAG
CCGGCAGGGGACTGGGACGCTCTGACTGTGGCACCCCCCCGCTCCTGGCT
TTTTACCAACCACAAAAATTTTTATGTCTCGCGGGGGTCCAAGATTTCAA
GGGGTGGGGGGGAAATAAAGAAAGAAGCAAGGCCCCCCCCTAACCCCCTT
TTTATTTTTTTGTAAAGAAAAATTCTTTTTTCTTTCTCGAAAAAAAGGGG
GGGGGGAAGAAAGGGGATTTCTTTTTAATTGAAATTATTAAACGCGGGGG
AAGATCCTCCCCCCGCGCTTTTTGGGTTTCTGTGGTTTTTTTATCTCCTC
CTCAAAAGGGCGGGGGGGAAGGNCGGTGAATTAAAAAAAAAATCCCCTCG
GTTCCTGAGAGGGTAAGGTTCCCGAGTGTGTGGAGAGTTTTCATTTCANG
ATGAGAGTCTGTGGTA
CGTCTCATTTNNNACAGATGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATAAGGTGCCCCTGAAATCAGA
AGCTAACGATGCTGCTCCTTCCTCTGCCAAAGAAAAGGGAGAGGAAAAGC
CTGAGTCTAAAGGCACGGTGACTGGGGAGAGGCAGAGCGGCGATGGGCAG
GTCAGTACACGGCAGGAGGGCACAGGGCCTCTCAAGTCCCTGGATGTGGA
AGAGTAAGGAGGCCCTTATCTTCCAGGAGAGCACAGAGCCTGTGGAGAAC
AAAGTGGGGAAAAAAGGCCCTAAGCACTTGGATGACGATGAGGATCGGAA
AAACCCAGCCTACATCCCCAGGAAAGGGCTCTTCTTTGAGCACGATCTTC
GAGGACAGACTCTGGAGGAGGAAGTCCGGTAACAGCCATTTTTGCTTTCC
TGCTGCTGACTGCTGTGCTTAGTGCTTTACCGCTCAGACATTAAGATGAG
CATCACTGCTGGGGAATTGAAGCTCGCAGTGCTCGGCAGCTAGGTGCCAG
GCACACTGCCACACACTTGCAGTCCTGGCACTCGGGTCTGAAGCAGGGTG
CTTGTGAGCTTGAGGCCGGTTTGGCTGCCTAATGAGACCCTGTCTCACAG
AGCAAAAAGAGGTGGGTGTGGTAGTGTGCAGCCCAACCCCAGCTCTCAGG
ATGAAGAGACAGGAACAATTCTAAGAGAGGTGAGTTCCAGGCCAGCCAGA
GTTACATGGTAAGACCTTGTCTTTACAAAAGGGAAGATTTGGTAACTGTT
GATGGTACAAGAGATAGGATCCAGATTTAAAGCAGGTGTCCCAGAACTTT
GGTCATTACCCCTCTACCTCCTTAATCTGTGCCTCCTGAAAAAGGAAGAA
TTTTTAGGCTTACTTTTTAGTAAACAGATTATTTTCCTAAGTATTAATTG
TTCTCCAGATACCCCTGGCTTGGTTTGGTCCCGAACCCCAGGGGACGCCT
CCTAAAGCTATGGCAAGAAGGAAGGCCCCTGGTAACTATGTAAACTTCCG
TGAGGATGAACATGGCCCTAACCTCTGCCAGGAGCTAATTGCCCCCTTAT
GGCTATAACATTTGGATCGCCCCAACCTCTGTGAGTTTATCTAACCCTCG
AAAATCCTGTAAACTCCGCAGGGAAAATTCCGGAGGTCGGGTTTCTCACT
CTTAAACGGTCTGTCCGGGACCTATTTCTACCCTCCCCACATTCCATTAC
TTGTGGTTGCTGGACTACTCTACTTCCTCACTCTTTCTTCTCTATTCTTC
CTTCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_f10.g1 MSMg01no332_f10.g1 CHROMAT_FILE:
MSMg01no332_f10.g1 PHD_FILE: MSMg01no332_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:41 2005
         (606 letters)



>mm_chr11_98682628_98683633
          Length = 1006

 Score = 1118 bits (578), Expect = 0.0
 Identities = 599/606 (98%), Gaps = 1/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaagggagaggaaaagcctgagtctaaaggcacggtgactggggagaggcagagcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaagggagaggaaaagcctgagtctaaaggcacggtgactggggagaggcagagcgg 260

                                                                       
Query: 61  cgatgggcaggtcagtacacggcaggagggcacagggcctctcaagtccctggatgtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgatgggcaggtcagtacacggcaggagggcacagggcctctcaagtccctggatgtgga 320

                                                                       
Query: 121 agagtaaggaggcccttatcttccaggagagcacagagcctgtggagaacaaagtgggga 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtaaggaggcccttattttccaggagagcacagagcctgtggagaacaaagtgggga 380

                                                                       
Query: 181 aaaaaggccctaagcacttggatgacgatgaggatcggaaaaacccagcctacatcccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaggccctaagcacttggatgacgatgaggatcggaaaaacccagcctacatcccca 440

                                                                       
Query: 241 ggaaagggctcttctttgagcacgatcttcgaggacagactctggaggaggaagtccggt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ggaaagggctcttctttgagcacgatcttcgaggacagactcaggaggaggaagtccggt 500

                                                                       
Query: 301 aacagccatttttgctttcctgctgctgactgctgtgcttagtgctttaccgctcagaca 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aacagccatttttgctttcctgctgctgactgctgtgcttagcgctttaccgctcagaca 560

                                                                       
Query: 361 ttaagatgagcatcactgctggggaattgaagctcgcagtgctcggcagctaggtgccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaagatgagcatcactgctggggaattgaagctcgcagtgctcggcagctaggtgccag 620

                                                                       
Query: 421 gcacactgccacacacttgcagtcctggcactcgggtctgaagcagggtgcttgtgagct 480
            |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacactgccacacggttgcagtcctggcactcgggtctgaagcagggtgcttgtgagct 680

                                                                       
Query: 481 tgaggccggtttggctgcctaatgagaccctgtctcacagagcaaaaagaggtgggtgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaggccggtttggctgcctaatgagaccctgtctcacagagcaaaaagaggtgggtgtg 740

                                                                       
Query: 541 gtagtgtgcagcccaaccccagctctcaggatgaagagacaggaacaattctaagagagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 gtagtgtgcagcccaaccccagctctcaggatgaagagacaggaacaat-ctaagagagg 799

                 
Query: 601 tgagtt 606
           ||||||
Sbjct: 800 tgagtt 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)