BAC Information

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BAC

Clone NameMSMg01-332M21
Chromosome11 (Build37)
Map Location 44,268,847 - 44,269,555
singlet/doubletsinglet
Overlap geneUblcp1
Upstream geneLOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b, Il12b
Downstream gene3732413I11Rik, Ebf1, LOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332M21.T7 (MSMg01no332_m21.b1)MSMg01-332M21.TJ (MSMg01no332_m21.g1)
ACCAG448736AG448737
length1,1791,230
length of high quality
(start - end)
612 (129 - 740)709 (134 - 842)
definitionCHROMAT_FILE: MSMg01no332_m21.b1 PHD_FILE: MSMg01no332_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:39 2005CHROMAT_FILE: MSMg01no332_m21.g1 PHD_FILE: MSMg01no332_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNGGCCGTTCATGGGNATCATTGCGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTAGGCACTGCCTGAGACTCTATCTGAATGNANTTTTAGGA
AGNNANTGGTTGAATATCCCTAAAAATCCATGTCCTGTCTGTTGCCTTTG
ATTCCTCCTTTTATACTGATCTCCCTCCAATTTCTATCATCGGTTGTGTA
CCAATTTTCTCCAAATTGAAACATTCTCTCCAGAAAGGTGGAAGATAGGG
CTGATGAGACTAAGAAACCAAACAAACTTTTGAGGACTGGAAAAAGCTGA
AATCCACACAATTCTCCAGAGCCCCACCACCACCCCCAAGACTGGAGAAG
CAGCACACGGCTGTTGGAGGAGGAGATGAGCCAGCCCAGCTGTCAAGACG
ACATCCTCATCTTTCAAGCTGCCTGTCAGTCCCACAGAGAGCTCTAGAAT
GCAGCTTCTGAGAGTCATCACCCATGAGGGGTGAGTTTTGCAATAGGGCA
GATCCTTTTGGGTAGTACCGGGCCCTGTATGTAACCACTTATCCATACTC
CTGAAAATAGCTCCAATAAGCTCTTGTTCACCAAATTGAACTTAGGCACA
AGTGTTTACTTTGATCTGTTGCAGGTTCCCTACCTGAGGTGAGTAAAGGT
GCAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGATCTC
AATTTCTCACAGCATCAAGTATTTCTTTTCAATTTCTCATGTGCAATGAG
TATACTTCTTTCGAACCTCAAAGCATTTGGTGCATTTTTATTTTAAAAAA
AAACAGTGGTACCATTTACAGGTTATTGCTCCCGAAAAAACAACTGGACA
CGCTTTAAGCATAATAAAAAGTCTTTATTGTCTTTCTAAAAAACTTATTC
TCTGTTTTACATCCTTAAGAAAGCGGTGGACAAGCAGGATCCTACCCTAA
GGGTTAAAAGAAAAAAAAAAATGACCCCCCCTGGCTGGCCTGGGGGAGGT
AACCTTTTAACCTTGAGAAGAAGAAAGGGACCCGNAAAAAAACCTTGAGG
TCTCTTTTTTTTTTTCCTGAGGTGGGGTTTTTCACCGGGGAAAATTTTTT
AATTTCCCCCACCGCGTAACAAAAACCAAAATTTTCCCGGTTTAAAAAAA
ACCTTTCTATAAAAGTCACTCTTTTTTCT
NCCCGACTCTTNTNNNAAATGAAGTGAGGCTGGGGCGCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTAAAGCCTCCCACCA
TGATTCTTTAAGGCAAGGTCTCCTTTTGAGCTACAGCCTTCTCTATGTTT
TTGACTAGAGTCCTTTTATTCTTTGTTTTGTTAATATATTTTATGTGTGG
GATGTGTGCATTCAGGTATGCCCTCCTTTAGTATCTTTTATTTCACTATA
TGCAGGAAAAATTAGATCTTTAGATGAACTCTGAGTTAATTAGAAATCGC
AACTCTATGTAATATTGGGACGTAGGCAGTGTGATGTGGTATCTGGTGCT
TACAACCTCCCAAGGCTAATTGTAAATCTGAGCAGCCTGATTTGGTGACC
CGCTTCACTTTGTGTTTGAGAAATACGAGGAACATAGCACTCCACAAGTA
ATTACAAACTGTACTCATCTTAAAAGGTCTGCCCTGAAATAAGTCCTTTG
GCATGAGAGGTATATTGCTTTACTGAGCTTAGTCTGATTCTGTTTTGACG
AGTTTATCTCATTTCCTGCAGGTATCTATCAAAGAAGCAAGGACAGTAGT
TAGCAGTTACACTCAGAGTTGAAGATCCGGAGGTCTGTGGACCTCTGTTT
CTTTGCTAGGCATTACCACGGCTGTGCTGGACACTGAAGCAGATGCCAGC
CTGCCTAGCTGTGGTCTTCCAATGCTTTGTAAACAAAGTGCTAAACAAAC
AAACAAACAAAAAGTTCTCTTCCCTCTATGTTAATTTACTCTTGAAGAAT
TGTTCTCTGGCATTAATTATTGAGGTGTTTCCCAAATCCTCTAANAATGG
GAAAAGGAAAGGAAAATGAAAAAAGGAGAAAAATATATCTACGATTGCCA
TCTTGTGACTTTGNAAATGAGTTTTGTCTTATGCTTTTCTGCTTTTGGCT
CCTTGAATAACCAGCTGCCTGAGTCTGAGACCAAATCTGTCTTTCAAATA
ACTAGTGGTTTCCCCCTTTAAAACCAAAAGCGTACCAAAAACCCCCAAAC
AACTTTCTAAAAAACAACCTGGTTTTTTTTCTGAAAAACTCCCAAAATTT
TCCTTCCCTTTTGGAAATTTCCTCCCTCGGGCTCAACCCGAAAAAACTTG
AAAATTGGTTGTTGTCAGGGTCTCCCTATAAAAAAAAAAAAACTTTCGTG
TAAAAGGGGGTTCTCTAATATAATAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_m21.g1 MSMg01no332_m21.g1 CHROMAT_FILE:
MSMg01no332_m21.g1 PHD_FILE: MSMg01no332_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:39 2005
         (709 letters)



>mm_chr11_44268647_44269755
          Length = 1109

 Score = 1348 bits (697), Expect = 0.0
 Identities = 706/709 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagccttctctatgtttttgactagagtccttttattctttgttttgttaatatatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 cagccttctctatgtttttgactagagtccttttattctttgttttgttaatatatttta 850

                                                                       
Query: 61  tgtgtgggatgtgtgcattcaggtatgccctcctttagtatcttttatttcactatatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tgtgtgggatgtgtgcattcaggtatgccctcctttagtatcttttatttcactatatgc 790

                                                                       
Query: 121 aggaaaaattagatctttagatgaactctgagttaattagaaatcgcaactctatgtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aggaaaaattagatctttagatgaactctgagttaattagaaatcgcaactctatgtaat 730

                                                                       
Query: 181 attgggacgtaggcagtgtgatgtggtatctggtgcttacaacctcccaaggctaattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 attgggacgtaggcagtgtgatgtggtatctggtgcttacaacctcccaaggctaattgt 670

                                                                       
Query: 241 aaatctgagcagcctgatttggtgacccgcttcactttgtgtttgagaaatacgaggaac 300
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 669 aaatctgagcagcctgatttggtgacccgcttcactttgtgcctgagaaatacgaggaac 610

                                                                       
Query: 301 atagcactccacaagtaattacaaactgtactcatcttaaaaggtctgccctgaaataag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atagcactccacaagtaattacaaactgtactcatcttaaaaggtctgccctgaaataag 550

                                                                       
Query: 361 tcctttggcatgagaggtatattgctttactgagcttagtctgattctgttttgacgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcctttggcatgagaggtatattgctttactgagcttagtctgattctgttttgacgagt 490

                                                                       
Query: 421 ttatctcatttcctgcaggtatctatcaaagaagcaaggacagtagttagcagttacact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttatctcatttcctgcaggtatctatcaaagaagcaaggacagtagttagcagttacact 430

                                                                       
Query: 481 cagagttgaagatccggaggtctgtggacctctgtttctttgctaggcattaccacggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cagagttgaagatccggaggtctgtggacctctgtttctttgctaggcattaccacggct 370

                                                                       
Query: 541 gtgctggacactgaagcagatgccagcctgcctagctgtggtcttccaatgctttgtaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtgctggacactgaagcagatgccagcctgcctagctgtggtcttccaatgctttgtaaa 310

                                                                       
Query: 601 caaagtgctaaacaaacaaacaaacaaaaagttctcttccctctatgttaatttactctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caaagtgctaaacaaacaaacaaacaaaaagttctcttccctctatgttaatttactctt 250

                                                            
Query: 661 gaagaattgttctctggcattaattattgaggtgtttcccaaatcctct 709
           ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 249 gaagaattgttctctggcattaatttttgaggtgtttcccaaatcctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)