BAC Information

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BAC

Clone NameMSMg01-332O15
Chromosome11 (Build37)
Map Location 12,615,592 - 12,774,388
singlet/doubletdoublet
Overlap genenone
Upstream geneIkzf1, Fignl1, Ddc, Grb10, Cobl
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332O15.T7 (MSMg01no332_o15.b1)MSMg01-332O15.TJ (MSMg01no332_o15.g1)
ACCAG448815AG448816
length1,2421,263
length of high quality
(start - end)
599 (153 - 751)784 (88 - 871)
definitionCHROMAT_FILE: MSMg01no332_o15.b1 PHD_FILE: MSMg01no332_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:53 2005CHROMAT_FILE: MSMg01no332_o15.g1 PHD_FILE: MSMg01no332_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,773,790 - 12,774,388)(12,615,592 - 12,616,292)
sequence
NNGGCCGATTTTTGNNNCACATTGGCGCTAAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCCTCAAGTAACTGAAACCTTAAACTGAAGGAAATAACGGG
AGATCTTATCTTGATGAACATTTAAATAAAANAGTTGGNTANAATANAAA
GNTCAGCATACCTAAGCTTAAGACCTAAGATTTGTATTATTGCAATAATA
CCCCAAGTGAACATGAAAAAGTGAGATAAATGATGAAAATTTTCTAGTAC
TTAGAAAATGGACTATTACTTGGGACACAGACACAATGCTCTTTGTCATA
GTCAAAAGCATCATATTTTTTCTTCATCACAAATTTAGAAGTCTCATTCT
GCAACCATGGTTCTTTACTAAAACACACCAAGCTTATTACTTTTGTCCCT
ACAGTCACTCTTCTTTAGCTTCTTTTCCAAACACTTGGCCATGCACAGAG
CATGACTAAAATACTGTATAGCTTTCCATCACACTAACCCACAATTCCAC
ACCTGAATGCTTACACACGTATGTTCTCCTTTCTCTTGGTGTCTCACTGG
TATTTCCACAGTTAACCATTTACCAGCTATTCCTTTGGACACTCCCTTTG
CACTGTACTGTTTAAAGTACCACATACAGTCTTCTGCAGACAATGTGAGA
GCTGGGACAGGCAATCACAGGCTGACTGTGCTATGCACTAAAGGACAGGT
TTGTGGGTGGCATGGAGGTCCATGGGTCTCTGTGACTCTTGGCACTGGAT
TGTTGAGATTTTCAGCTTTCCTTCACAAATAACCCTGCATGGTCCATTTC
CTTCATACATACAGATTCTTGGGGATGTCTTTAATGGAGGCTCACAATTT
ATTTGTTGAGACTGCTCTTTCCCCTTATGTTGTTACCTGGCTTCCACTCC
TTTATTAAGGGGAAAGGCGGGAGGCCCCCTTCGCAAATTATTATAACAAA
AATAAAGGACCCCTTTATTGGAGGGGCGTTTTACTTCCGCTACTACTCCT
TAATATTCCCAGAAAAAAAATAAATAAATTCCATATGGGAAACCCTGGGT
GGGGAAGCTTTAAATAAAAACCAAGGGCCCCCTCACATAATCCTGGACAG
GGGAAACCTGGGTTTTCCCCCTGGAAAACTCTCGAACCCGGAAGGTAGGT
GGGTGGACCCCATTTTACATAATGTAATAAGAGGGGGCGAAAACCGTGGG
GGGAGAAAATATAAATTTCAGGAGGGGAAGGGGAGAACCAAT
NCCGGCTTTTNNNNAAATCAGTGAGCCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGGCCCTTTCTGTCCCT
TTTCTAGATATCCAAGGGCCGTCCTTGAAACTCATAGCTCTTCTCCTGAA
GGACCTCTCTAACTTCTTCAGAATTCTTTGGGCTGTGCCATAACTTGGCC
CTTAAGTGACTATTAAAATACTTTTGTAAAGGCTTAGTCTTCAGCTCTCT
AATGTAATTGGGAGGAAAGTATTCAAGTGGTGCTCAGTAATACAAAGAAA
TTTGGGGCATTTCAGTGAAATGGATATTGGAATCCCGAATCTGCCTCTCC
ACCCTGTTTCCTGGTTACCTCAAGCAGAGTAACCCCCTTTGCCATGTGCT
TCCACCACCATGATGAACTGTGCTGTCACAGGGTGTGAAGAATAATAGCC
TACCATGGGCTAGAATCTCTGAAGCCTTGGGCTAAAATAAATCTTTCTTC
ATTTGATTTGAGTTTCTTGGGTATTTGTCACAGTGATGAGAGCTGTCTAA
TATTGTCTGAAGCTGCTTCTTCTCTTACACAGATGGCATCATCTAGTTCT
CAATGTAACATGGTGTCATTGATTTTCTGAGAAAATAGAACACCTAGATA
AAAAATGTGCAAACTACATTCTCTTCAGGAAGCACCTTTAGCTAGTTTTG
CCCTGGAAGAAGCATTCCTCTACAATTCTAGAGTCAACCATTCCTAGTTG
TCTGCTCATGGGTTGAAAATATCATTGGTTTTCTGACTGAACTTACAATC
CANATAGGCATCAGGTTTATAATTTATTTTCTTAACAAACAATATGACCC
CTGAGCTCCTTGTGGGCATTTTACTGTAAGGATGTGAGGATTGGATATGA
GAGCCAATCCCCAGCATGAGGGTGCTCAAAGTCTTGCTTTCTCCTTAGTC
AGCTGAGTCAGTGTGAAGAAATGTGAAACACCTAAGGGGGAAAAGATGAT
GTCTTGTAAAAATTTACATGGTCGGTACCCCGCCTGGGCCAATTGAAAGA
AAAACTTATATTTTTTGGAATTCTGCGAACATTTTAAAGGAGCTTTTGGT
TTCTATAACCCTCCCCAAACAAATGGAACAAAACCCCGCCAAAAACCCTT
GGGAAAAAAAAAAAAAACCTGGCTCCCTGTTTCCCCAAGAGGGGGGGTGT
AATAATATAAAAAACCCCTGTTATTCCTTAGCCCCCGGCGGAGTGTGGGG
CACTTCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_o15.b1 MSMg01no332_o15.b1 CHROMAT_FILE:
MSMg01no332_o15.b1 PHD_FILE: MSMg01no332_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:53 2005
         (599 letters)



>mm_chr11_12773590_12774588
          Length = 999

 Score = 1135 bits (587), Expect = 0.0
 Identities = 596/599 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcatacctaagcttaagacctaagatttgtattattgcaataataccccaagtgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tcagcatacctaagcttaagacctaagatttgtattattgcaataataccccaagtgaac 740

                                                                       
Query: 61  atgaaaaagtgagataaatgatgaaaattttctagtacttagaaaatggactattacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atgaaaaagtgagataaatgatgaaaattttctagtacttagaaaatggactattacttg 680

                                                                       
Query: 121 ggacacagacacaatgctctttgtcatagtcaaaagcatcatattttttcttcatcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggacacagacacaatgctctttgtcatagtcaaaagcatcatattttttcttcatcacaa 620

                                                                       
Query: 181 atttagaagtctcattctgcaaccatggttctttactaaaacacaccaagcttattactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atttagaagtctcattctgcaaccatggttctttactaaaacacaccaagcttattactt 560

                                                                       
Query: 241 ttgtccctacagtcactcttctttagcttcttttccaaacacttggccatgcacagagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgtccctacagtcactcttctttagcttcttttccaaacacttggccatgcacagagca 500

                                                                       
Query: 301 tgactaaaatactgtatagctttccatcacactaacccacaattccacacctgaatgctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgactaaaatactgtatagctttccatcacactaacccacaattccacacctgaatgctt 440

                                                                       
Query: 361 acacacgtatgttctcctttctcttggtgtctcactggtatttccacagttaaccattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acacacgtatgttctcctttctcttggtgtctcactggtatttccacagttaaccattta 380

                                                                       
Query: 421 ccagctattcctttggacactccctttgcactgtactgtttaaagtaccacatacagtct 480
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 379 ccaactattcctttggacactccctttgcactgtactgtttaaagtgccacatacagtct 320

                                                                       
Query: 481 tctgcagacaatgtgagagctgggacaggcaatcacaggctgactgtgctatgcactaaa 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 tctgcagacaatgtgagagctgggacaggcaatcacaggctgactgtgctatgcactaga 260

                                                                      
Query: 541 ggacaggtttgtgggtggcatggaggtccatgggtctctgtgactcttggcactggatt 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggacaggtttgtgggtggcatggaggtccatgggtctctgtgactcttggcactggatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no332_o15.g1 MSMg01no332_o15.g1 CHROMAT_FILE:
MSMg01no332_o15.g1 PHD_FILE: MSMg01no332_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:53 2005
         (784 letters)



>mm_chr11_12615309_12616492
          Length = 1184

 Score = 1303 bits (674), Expect = 0.0
 Identities = 694/701 (99%)
 Strand = Plus / Plus

                                                                       
Query: 84  gaattctttgggctgtgccataacttggcccttaagtgactattaaaatacttttgtaaa 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gaattctttgggctgtgccataacttggcccttaagtgactattaaaatacttttgtaaa 343

                                                                       
Query: 144 ggcttagtcttcagctctctaatgtaattgggaggaaagtattcaagtggtgctcagtaa 203
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 344 ggcttagtcttcagctctctaatgtaattgggaggagagtattcaagtggtgctcagtaa 403

                                                                       
Query: 204 tacaaagaaatttggggcatttcagtgaaatggatattggaatcccgaatctgcctctcc 263
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 404 tacaaagaaatttggggcatttcagtgaaatggatattggaatcctgaatctgcctctcc 463

                                                                       
Query: 264 accctgtttcctggttacctcaagcagagtaaccccctttgccatgtgcttccaccacca 323
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 464 accctgtttcctggttacctcaagcagagtaactccctttgccatgtgctcccaccacca 523

                                                                       
Query: 324 tgatgaactgtgctgtcacagggtgtgaagaataatagcctaccatgggctagaatctct 383
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 524 tgatgaactgtgctgtcacagggtgtgaagaataatagcctaccatggactagaatctct 583

                                                                       
Query: 384 gaagccttgggctaaaataaatctttcttcatttgatttgagtttcttgggtatttgtca 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaagccttgggctaaaataaatctttcttcatttgatttgagtttcttgggtatttgtca 643

                                                                       
Query: 444 cagtgatgagagctgtctaatattgtctgaagctgcttcttctcttacacagatggcatc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 644 cagtgatgagagctgtctaatattgtctgaagctgcttcttctcttacacaaatggcatc 703

                                                                       
Query: 504 atctagttctcaatgtaacatggtgtcattgattttctgagaaaatagaacacctagata 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atctagttctcaatgtaacatggtgtcattgattttctgagaaaatagaacacctagata 763

                                                                       
Query: 564 aaaaatgtgcaaactacattctcttcaggaagcacctttagctagttttgccctggaaga 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aaaaatgtgcaaactacattctcttcaggaagcacctttagctagttttgccctggaaga 823

                                                                       
Query: 624 agcattcctctacaattctagagtcaaccattcctagttgtctgctcatgggttgaaaat 683
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 agcattcctctacaattctagagtcaaccattcctagttgtctgctcatgggttgaaaat 883

                                                                       
Query: 684 atcattggttttctgactgaacttacaatccanataggcatcaggtttataatttatttt 743
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 884 atcattggttttctgactgaacttacaatccaaataggcatcaggtttataatttatttt 943

                                                    
Query: 744 cttaacaaacaatatgacccctgagctccttgtgggcattt 784
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 cttaacaaacaatatgacccctgagctccttgtgggcattt 984


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 784
Length of database: 1184
Length adjustment: 10
Effective length of query: 774
Effective length of database: 1174
Effective search space:   908676
Effective search space used:   908676
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)