Query= MSMg01no333_m05.b1 MSMg01no333_m05.b1 CHROMAT_FILE:
MSMg01no333_m05.b1 PHD_FILE: MSMg01no333_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:01 2005
(344 letters)
>mm_chr11_78023268_78024011
Length = 744
Score = 642 bits (332), Expect = 0.0
Identities = 335/336 (99%)
Strand = Plus / Minus
Query: 8 ggggggggggggtctcctcctccctgatgccccgtaaccttgtatcactctcgcctgcct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggggggggggggtctcctcctccctgatgccccgtaaccttgtatcactctcgcctgcct 415
Query: 68 gtaactgctgtcctcagtgaaggcctagtgtctccagttagcctccagcacagcttcctc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtaactgctgtcctcagtgaaggcctagtgtctccagttagcctccagcacagcttcctc 355
Query: 128 tggcagcctgtactcagcacaaggccatggcctccttaaccttgactgtaccctgccatt 187
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 354 tggcagcctgtactcagcacaaggccatggcctccttaaccttgactgtgccctgccatt 295
Query: 188 tgcagcctctccctgtcatctttcctcctccggcacccattctggctaatgtacatatgg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgcagcctctccctgtcatctttcctcctccggcacccattctggctaatgtacatatgg 235
Query: 248 ttgatgtttatttggtggccacagcgggtcttagtcagagttgctattgctatgataaaa 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttgatgtttatttggtggccacagcgggtcttagtcagagttgctattgctatgataaaa 175
Query: 308 caccgtaaccaaaagcagtttgggaaggaaagggtt 343
||||||||||||||||||||||||||||||||||||
Sbjct: 174 caccgtaaccaaaagcagtttgggaaggaaagggtt 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_m05.g1 MSMg01no333_m05.g1 CHROMAT_FILE:
MSMg01no333_m05.g1 PHD_FILE: MSMg01no333_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:01 2005
(348 letters)
>mm_chr11_77862461_77863208
Length = 748
Score = 623 bits (322), Expect = 0.0
Identities = 342/350 (97%), Gaps = 4/350 (1%)
Strand = Plus / Plus
Query: 1 aaggccagcctgaactttgcaagtttatatttccaagacagtcccactcagtgaaaaggt 60
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 197 aaggccagcctggacttttcaagtttatatttccaagacagtcccactcagtgaacaggt 256
Query: 61 aaaggtgctttgccaccaagcctgataacctgagttagatccccagaacccacccacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 257 aaaggtgctttgccaccaagcctgataacctgagttagatccccagaacccacccacgtg 316
Query: 121 gtgggagaaatgagctaacctcctcaaactttcctctgacttccacacacaggctgtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgggagaaatgagctaacctcctcaaactttcctctgacttccacacacaggctgtggc 376
Query: 181 acacattcatgcac--acaca--actaattgtgatttaaacacaatttttaatatgtaaa 236
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 acacattcatgcacgcacacacgactaattgtgatttaaacacaatttttaatatgtaaa 436
Query: 237 atgggccaaagttgttactaggggatggagagcagatagccccaaggactgactgaccaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgggccaaagttgttactaggggatggagagcagatagccccaaggactgactgaccaa 496
Query: 297 ccgtggtttcctttgcttcccaggaggctgttgtggttctgactacaaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccgtggtttcctttgcttcccaggaggctgttgtggttctgactacaaac 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
