Query= MSMg01no334_d02.b1 MSMg01no334_d02.b1 CHROMAT_FILE:
MSMg01no334_d02.b1 PHD_FILE: MSMg01no334_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:32 2005
(655 letters)
>mm_chr11_65198810_65199862
Length = 1053
Score = 1038 bits (537), Expect = 0.0
Identities = 565/575 (98%), Gaps = 2/575 (0%)
Strand = Plus / Minus
Query: 81 tctactaccaagtgctggggttttaagtatatgtgtgtttgcgccaagggctgcctggaa 140
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1053 tctactaccaagtgctggagttttaattatctgtgtgtttgcgccaagggctgcctggaa 994
Query: 141 cctgagatcagaagagggtgcttgcttccttggagtggaaattatgaacaattctgagct 200
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 993 cctgagatcagaagagggtgcttgcttccttggagtggaaattatgaaccattctgagct 934
Query: 201 gttatagggtactgggaaccaaaattttgttctctccaagaccagtaagtgctcttaact 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gttatagggtactgggaaccaaaattttgttctctccaagaccagtaagtgctcttaact 874
Query: 261 actgagccactattccaaccacccaaacaatactttttaaaaatgtatttatgaaaaaga 320
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 actgagccactagtccaaccacccaaacaatactttttaaaaatgtatttatgaaaaaga 814
Query: 321 aacattatcaaggtattatatccataccaacttatgtcttcaaaccattgaatattattt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aacattatcaaggtattatatccataccaacttatgtcttcaaaccattgaatattattt 754
Query: 381 acaatgtaataatattcagtgtaattaataataaatcactgtatattattaatgttttgt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 acaatgtaataatattcagtgtaattaataataaatcactgtatattattaatgttttgt 694
Query: 441 tgattattcatgatgtaactatgtctctttaaggttttccttggctagctttctgtagtg 500
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcattattcatgatgtaactatgtctctttaaggttttccttggctagctttctgtagtg 634
Query: 501 ttaaaatgtttcttttttttctgaggctctccattaagcatagaggatgcaggtgaattg 560
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttaaaatgtttctttgttttctgaggctctccattaagcatagaggatgcaggtgaattg 574
Query: 561 atgcagagagaaaagaaaaggtttctttacttttacaaagagatttccttttccttttaa 620
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aagcagagagaaaagaaaaggtttctttacttttacaaagagatttccttttccttttaa 514
Query: 621 ctatgtgcatggcagtgtgtgtgtgtctgtttgca 655
|||||||||||||| |||||||||||||||||||
Sbjct: 513 ctatgtgcatggca--gtgtgtgtgtctgtttgca 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1053
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1043
Effective search space: 672735
Effective search space used: 672735
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_d02.g1 MSMg01no334_d02.g1 CHROMAT_FILE:
MSMg01no334_d02.g1 PHD_FILE: MSMg01no334_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:32 2005
(533 letters)
>mm_chr11_65033662_65034594
Length = 933
Score = 967 bits (500), Expect = 0.0
Identities = 524/532 (98%)
Strand = Plus / Plus
Query: 2 gtcacgtatgcctgagagcccttagaactcttgacagcctttcctctgggttctgtgcca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtcacgtatgcctgagagcccttagaactcttgacagcctttcctctgggttctgtgcca 261
Query: 62 tctacattctgtcttacagcgtctcacttaattccatggttggagaaaagccagtaagct 121
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 tctacattctgtcttacagcgtctcacttaattccatggttggagaagagccagtaagct 321
Query: 122 aggagagtcagagaggatgctaaccaatggggaaagactcacaacttctaccccatttca 181
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaagagtcagagaggatgttaaccaatggggaaagactcacaacttctaccccatttca 381
Query: 182 gggcttttcctgctctgtaaagctggaatgccgtcttggaaggaaatctgcattctggag 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggcctttcctgctctgtaaagctggaatgccgtcttggaaggaaatctgcattctggag 441
Query: 242 agagcacactgctgctgggtgcacgctgcacctccaccttaaatgctcttccttcttcct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agagcacactgctgctgggtgcacgctgcacctccaccttaaatgctcttccttcttcct 501
Query: 302 gggcttgctccatgcttcctatccacggtccttgctttccctttcccaggctattctgag 361
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 502 gggcttgcttcatgcttcctatccaaggtccttgctttccctttcccaggctattctgag 561
Query: 362 ccagatgtctcccttccctggcctcccctgcactttcggaataccatgcactttctctcc 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccagacgtctcccttccctggcctcccctgcactttcggaataccatgcactttctctcc 621
Query: 422 tgtgctgggttctggatgctgattctcgtgcccaccccctctgttaccctggggagttct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 622 tgtgctgggttctggatgctgattctcgtgcccaccccctctgttaccctgggtagttct 681
Query: 482 ctaaggttagaaacccaagtcttattcatctctgcacccacaaagtcagcca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctaaggttagaaacccaagtcttattcatctctgcacccacaaagtcagcca 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
