Query= MSMg01no334_e15.b1 MSMg01no334_e15.b1 CHROMAT_FILE:
MSMg01no334_e15.b1 PHD_FILE: MSMg01no334_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:40 2005
(541 letters)
>mm_chr11_18782111_18783051
Length = 941
Score = 998 bits (516), Expect = 0.0
Identities = 535/544 (98%), Gaps = 6/544 (1%)
Strand = Plus / Minus
Query: 1 ttgtttcttagtttctgggtcaattaaatttaaatgatgtattttatgcttcgtgaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtttcttagtttctgggtcaattaaatttaaatgatgtattttatgcttcgtgaccaa 682
Query: 61 ttaaattaataggttattacaaaaaatattatcatcttttttgattaaagagctgtgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaattaataggttattacaaaaaatattatcatcttttttgattaaagagctgtgggt 622
Query: 121 acagtatattttataagcaattttcattagtttaaaaatgttcctttaggctagattaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagtatattttataagcaattttcattagtttaaaaatgttcctttaggctagattaag 562
Query: 181 cagccattcattgccagagcctggagaccttattcgaaggtgttcatcgcattcacagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagccattcattgccagagcctggagaccttattcgaaggtgttcatcgcattcacagtg 502
Query: 241 tgctattactcttt---actaaagccaattgaacatacttagcaatggcgttctgtcttt 297
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tgctattac---ttagaactaaagccaattgaacatacttagcaatggcgttctgccttt 445
Query: 298 cacccttgatgatgatggagcttatggctctcagaaacaatacgcccgtcactttccatc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacccttgatgatgatggagcttatggctctcagaaacaatacgcccgtcactttccatc 385
Query: 358 aactagagcaatccatgcagaagacaagaggcccctcaaagcaagaggagtattgtttta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactagagcaatccatgcagaagacaagaggcccctcaaagcaagaggagtattgtttta 325
Query: 418 ggtccaatttttcttattgttcttaaaatcattgtaaggtagacagagttctgtgaagcc 477
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtccaatttttcttattgttctcaaaatcattgtaaggtagacagagttctgtgaagcc 265
Query: 478 tttcttcccctccagctctaagaggccatgtggaaggaatttattgataactgttttgat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcttcccctccagctctaagaggccatgtggaaggaatttattgataactgttttgat 205
Query: 538 cccc 541
||||
Sbjct: 204 cccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_e15.g1 MSMg01no334_e15.g1 CHROMAT_FILE:
MSMg01no334_e15.g1 PHD_FILE: MSMg01no334_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:40 2005
(515 letters)
>mm_chr11_18611572_18612485
Length = 914
Score = 973 bits (503), Expect = 0.0
Identities = 512/515 (99%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 1 ctgtcgtgcacacggaccctctgcatgtcatgacattctggtttgtttatatatatttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtcgtgcacacggaccctctgcatgtcatgacattctggtttgtttatatatatttga 260
Query: 61 aaacttttgtagaaaacaatgttcactgagtattatagacaatgaatgtaggaaattagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacttttgtagaaaacaatgttcactgagtattatagacaatgaatgtaggaaattagt 320
Query: 121 ataacttcaagctaaatatgagccttgtacatccagtatacaactacatttatgttatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacttcaagctaaatatgagccttgtacatccagtatacaactacatttatgttatat 380
Query: 181 catactgtaaatgctaaagaagctgttgaattttatcataattattgggcataaataaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catactgtaaatgctaaagaagctgttgaattttatcataattattgggcataaataaaa 440
Query: 241 taaattcaatttcttatgtactgaacacaaaaactttctaaagagacaaaatactttatt 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaattcaatttcaaatgtactgaacacaaaaactttctaaagagacaaaatactttatt 500
Query: 301 catgaaaaaaaaaacagaaatagtgttgtagggaattttacctgtcttaagaaaaaaata 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaaaaaaaaa-cagaaatagtgttgtagggaattttacctgtcttaagaaaaaaata 559
Query: 361 ggtaggatgaaaattcttatcatttctaagagtcataaaacggggtctggcgaaggattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggtaggatgaaaattcttatcatttctaagagtcataaaacggggtctggcgaaggattc 619
Query: 421 atgattgcattcttttctgatgctttctctggcatatgagccgggagtaattcagctctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atgattgcattcttttctgatgctttctctggcatatgagccgggagtaattcagctctg 679
Query: 481 aagagcttaaggaggtttctaaggctgggggaagg 515
|||||||||||||||||||||||||||||||||||
Sbjct: 680 aagagcttaaggaggtttctaaggctgggggaagg 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space: 456520
Effective search space used: 456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
