Query= MSMg01no335_e23.b1 MSMg01no335_e23.b1 CHROMAT_FILE:
MSMg01no335_e23.b1 PHD_FILE: MSMg01no335_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:01 2005
(559 letters)
>mm_chr11_32535961_32536920
Length = 960
Score = 1031 bits (533), Expect = 0.0
Identities = 557/571 (97%), Gaps = 12/571 (2%)
Strand = Plus / Plus
Query: 1 cacagtgggaccggtcctgcatttgccatgtgggtgtcctggtcgtgtggctcctggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cacagtgggaccggtcctgcatttgccatgtgggtgtcctggtcgtgtggctcctggagg 249
Query: 61 aggacttgagctctcctcctccca-ggggctgtggctcctgaactcctggttatcaggga 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 250 aggacttgagctctcctcctcccaaggggctgtggctcctgaactcctggttatcaggga 309
Query: 120 gctgtggtccagctactgtgacttcctgggcatttccccctcaactctttcttccttggc 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gctgtggtccaactactgtgacttcctgggcatttccccctcaactctttcttccttggc 369
Query: 180 ttcgtcttctgtgcgggcagctttatcttagccaattgtttgagaatgcagatcaacaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttcgtcttctgtgcgggcagctttatcttagccaattgtttgagaatgcagatcaacaca 429
Query: 240 gagcaaggcggacttctggcctgggctgattttttttttttttttttttt---------- 289
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gagcaaggcggacttctggcctgggctgattttttttttttttttttttttttttttttt 489
Query: 290 gccagcattatcctgaaccttttagtgaactgtattggctgaactggtccgatttactta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gccagcattatcctgaaccttttagtgaactgtattggctgaactggtccgatttactta 549
Query: 350 gttgtggagtggtgccaggtagatgtgctcactctttgacatgctctagataagagttct 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gttgtggagtggtgccaggtagatgtgctcactctttgacatgctctagataagagttct 609
Query: 410 tgagagggcagcttgtttgacatgtagattcttcagctctgtgtttaattataactctca 469
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 610 tgagagggcagcttgtttgacatgtagattcttcagctctgtgcttaattataactctca 669
Query: 470 ctgggtcctcaggtgccagtccagagaactaagaccagctttgaagagcgcatttgttaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ctgggtcctcaggtgccagtccagagaactaagaccagctttgaagagcgcatttgttaa 729
Query: 530 tacaaaatctgctttccttttttttt-cttt 559
|||||||||||||||||||||||||| ||||
Sbjct: 730 tacaaaatctgctttccttttttttttcttt 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space: 521550
Effective search space used: 521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_e23.g1 MSMg01no335_e23.g1 CHROMAT_FILE:
MSMg01no335_e23.g1 PHD_FILE: MSMg01no335_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:01 2005
(535 letters)
>mm_chr11_32677623_32678557
Length = 935
Score = 936 bits (484), Expect = 0.0
Identities = 524/540 (97%), Gaps = 10/540 (1%)
Strand = Plus / Minus
Query: 1 cccactcgcttaccaacttaaagtgtggtttccaatctgcaagattgtgttcatttgtat 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cccactcgcttaccaatttaaagtgtggtttccaatctgcaagattgtgttcatttgtat 676
Query: 61 tttctgatgcattgggaacttggcttcctatttttgcctccttgctgagccttttcct-g 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct: 675 tttctgatgcattgggaacttggcttcctgtttttgcctccttgctgagcctttt-ctgg 617
Query: 120 cagcagctcac---gtggcatcgtgtggcaggatcatctctgcaatgagggactctggag 176
||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 616 cagcagctcacatggtggca---tgtggcaggatcgtctctgcaatgagggactctggag 560
Query: 177 ttgactcagagtctctgctgcagtgactgaataaagtggaaggggcccactcaggcttgg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgactcagagtctctgctgcagtgactgaataaagtggaaggggcccactcaggcttgg 500
Query: 237 caaatccaaaccacccagtagatgccaggaccagtctgatattgattagcattattgtta 296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caaatccaaaccgcccagtagatgccaggaccagtctgatattgattagcattattgtta 440
Query: 297 ccattccaacatttctgttataggacaggaagctgtcgtcacagtttcccataatcccct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccattccaacatttctgttataggacaggaagctgtcgtcacagtttcccataatcccct 380
Query: 357 gtgccatctctcccctcgaggaagactggactttgcacttgtttccagtgaatggaacac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgccatctctcccctcgaggaagactggactttgcacttgtttccagtgaatggaacac 320
Query: 417 aga-aaaatggtagcatttgcctcaacagttagctttgaagggctggggctcccctctcg 475
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 a-ataaaatggtagcatttgcctcaacagttagctttgaagggctggggctcccctctca 261
Query: 476 ttgcttttttccctttgtgcacttcaggaaatgacctgtcgtgctgaaacttctcacgtg 535
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 ttgcttttttccctttgtgcacttcaggaaatgacctgtcgtgctgaaagttctcacgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
