Query= MSMg01no336_a17.b1 MSMg01no336_a17.b1 CHROMAT_FILE:
MSMg01no336_a17.b1 PHD_FILE: MSMg01no336_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:01 2005
(530 letters)
>mm_chr11_27922757_27923686
Length = 930
Score = 882 bits (456), Expect = 0.0
Identities = 527/590 (89%), Gaps = 60/590 (10%)
Strand = Plus / Plus
Query: 1 catcaaacataaaagaaaagtgtaaatgagggatatttaaatattaattaaacagtattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 catcaaacataaaagaaaagtgtaaatgagggatatttaaatattaattaaacagtattt 200
Query: 61 gagaaacatttgtaattccctatcttggtttatttagataaataccttttgatctgaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaaacatttgtaattccctatcttggtttatttagataaataccttttgatctgaacc 260
Query: 121 acaggaaaattctgagctgtttgagtgtgcatgatgaatggcctccattcatgcttgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggaaaattctgagctgtttgagtgtgcatgatgaatggcctccattcatgcttgaat 320
Query: 181 tcaaatgaacaaagaaagacaggctctctactgacaaatcactttcatttgacatttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaatgaacaaagaaagacaggctctctactgacaaatcactttcatttgacatttcag 380
Query: 241 ctctaaacactgaggaaagacttgaagttaccaagtgaatgtgaaaaatatcattttggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctaaacactgaggaaagacttgaagttaccaagtgaatgtgaaaaatatcattttggt 440
Query: 301 gagtgcataagaaaacattgttttatgcaacaataatggtctatgatgaaggtaactatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgcataagaaaacattgttttatgcaacaataatggtctatgatgaaggtaactatc 500
Query: 361 ctctataaaaacaatggttttcatatgtatatatata----------------------- 397
|||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ctctataaaaacaatggttttcatatatatatatatatatatatatatatatatatatat 560
Query: 398 -------------------------------------cttgctgtgagctgagcttgaca 420
|||||||||||||||||||||||
Sbjct: 561 atatatatatatatatatatatatatatatatatatacttgctgtgagctgagcttgaca 620
Query: 421 gctgtttgatttagggggaaaaacccaaccattaatttaaaaattattccatatagttac 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgtttgatttagggggaaaaacccaaccattaatttaaaaattattccatatagttat 680
Query: 481 agcaggattttaaagtcaagcatttgccccatttgagctactactattag 530
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 agcaggattttaaagtcaagcatttgcccaatttgagctactactattag 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_a17.g1 MSMg01no336_a17.g1 CHROMAT_FILE:
MSMg01no336_a17.g1 PHD_FILE: MSMg01no336_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:01 2005
(538 letters)
>mm_chr11_28100170_28101106
Length = 937
Score = 944 bits (488), Expect = 0.0
Identities = 522/535 (97%), Gaps = 5/535 (0%)
Strand = Plus / Minus
Query: 6 ttcctcctgatttccaggtcaatgcaaaatcacactcattactaagatactattttggga 65
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 737 ttcctcctgacttccaggtcaatgcaaaatcacactcattactaaggtactattttggga 678
Query: 66 actggctaaattgaa-tttgtgggtgtcagatttctttaatttttcagaaaaaaaaaata 124
||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 677 actggctaacttgaattttgtggatgtcagatttctttaatttttcag---aaaaaaata 621
Query: 125 cttgtagttctttagagtttccagtttggaagatgaagtcctgtctggcctttctataaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttgtagttctttagagtttccagtttggaagatgaagtcctgtctggcctttctataaa 561
Query: 185 tagagtctgaatccatgaggttaggagaatgtgtgtaagcacaagactcggcgttttata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagagtctgaatccatgaggttaggagaatgtgtgtaagcacaagactcggcgttttata 501
Query: 245 tgtccaggttttcattctataaaatggacataatggtaacttgtacaaccatttggtatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtccaggttttcattctataaaatggacataatggtaacttgtacaaccatttggtatt 441
Query: 305 ataccttagctcaaatgagctacagactgtctcagattcccagaccttgaaacagttatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ataccttagctcaaatgagctacagactgtctcagattcccagaccttgaaacagttatc 381
Query: 365 tgtgaggcagacttaccaagtgggaagggtgctaactacagctctcatttctggacttaa 424
||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||
Sbjct: 380 tgtgaggcagacttaccaagtgggaagggagctatctacagttctcatttctggacttaa 321
Query: 425 tatttcagtgactttgccaataagactgaaatgctaatcc-ttttccaggattgttaaaa 483
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 tatttcagtgactttgccaataagactgaaatgctaatcctttttccaggattgttaaaa 261
Query: 484 agattaactaanacgattcatgtgtaaattgtcctctggaggtccttaaacatag 538
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agattaactaacacgattcatgtgtaaattgtcctctggaggtccttaaacatag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space: 489456
Effective search space used: 489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
