BAC Information

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BAC

Clone NameMSMg01-336G21
Chromosome11 (Build37)
Map Location 39,155,951 - 39,318,608
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336G21.T7 (MSMg01no336_g21.b1)MSMg01-336G21.TJ (MSMg01no336_g21.g1)
ACCAG451450AG451451
length741757
length of high quality
(start - end)		458 (44 - 501)423 (70 - 492)
definitionCHROMAT_FILE: MSMg01no336_g21.b1 PHD_FILE: MSMg01no336_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:29 2005CHROMAT_FILE: MSMg01no336_g21.g1 PHD_FILE: MSMg01no336_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,155,951 - 39,156,404)(39,318,186 - 39,318,608)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATCTCATACAATTGTTTTAATTGACTGTTTTATATACTTTCTTTCA
TTTATTACAATTACTGCTCTGGTACTTTTAATATCTTCCATATTGGGATT
TTGCTCTTTTTGTTAATCCCCTTTTCACCTTTTTTATTGCCTTCTTTCTT
CAATCTGAGAGAGTGTTTCAGTCTGAAAAAGTACCCCAGACTCTCTAGTT
AGTCTTTTTGTGTAGTGAGATCTGCATTATTTTTCCTGTATTTTATAATA
TTTTATTAGAACATGCATTCCTTCAGGCTCATTTTTGAAACAGCCACCTT
GTTAGTGAATTTTTTAGTTCTTGATTTTATTATTTATGATTTATTTCCTG
TGGTGCTTATTTCTGTTTTGGAAAATGTGAATTAATACTGGAGAAATATT
CCTGATGCACAGCCAAACAGAAGTAGCAGTTTCCTGCACATACGAAATCC
ACCAGAGCAGAATTACACTTNAAGTATGATCATCTATGGGCCAATATGCT
ATTAGTAAGTCTTGGGCATTATGACACTGCTGACTTAAAGCAAAGCTCAA
ACTAAGNTTGGAAAAATGNTTGGCCATCCTTTTGGGTTTTTATAACTATT
TTTCTCAATTAACCTCCCATACTATTCCAAAAAGCCCCCAACCTCCCCCA
CATTCCCTATCAAACATAACATTTTTTATCCGGGATTCCCA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTGAGGGAGGAACTGGGACTGAGAGCAGCA
TTTGGGATGTAAACAAATTAATTATTTAATTAGTTAATTAAAATACAATT
AAGAGCAATAAACTAAGAGAGAATGAGAGTAGTGTTCCAGGATACAAAGA
AATATGGTCATGGCCTGAAAATAATCTAATTTTCCAAGTAAAGATTCTGC
CCAGTTGAAGACAAAATTCAGTGTATAATAAAGAAAGGATTTTGGAGGGA
AGGGGTAGTAGGAAAGAAAAGAGTTGGCCGAGCAACTAAGAACAGTGTTT
GCTTTCACAGAGAATCTGTGTTTGATTCCTACAACCATATTGTGGGTCAC
ATTGTCTGTAAATTCACCCGATTATTGTCAAGGCAGGCCTTGCTTGAACT
GTGAACCTCCTTCATTGGCCTCCAACGTAATTTGGGAATGCAGTCCTCCA
AGACAAGGGTTTGGTTTGACTGTCAGCTCTACTAGTACAGTACACACCCT
TTAAAGAATGTGTGGTGGACAGACCTGATACTTTTAACATCATTGGGCTT
AAGTTTTTATAAGCCAAACCAAACTTATTGCTTACCGCTTCTTATGGTGA
AGGCCCTAATTGGCGGAAGCCCAAATTTTAGGCAATACCAATACCGGGAA
TAAAAGTGCTGTTATTTCCCCCCACAGGTTGCAAAAAAAAAGGAACCACT
TTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_g21.b1 MSMg01no336_g21.b1 CHROMAT_FILE:
MSMg01no336_g21.b1 PHD_FILE: MSMg01no336_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:29 2005
         (458 letters)



>mm_chr11_39155747_39156604
          Length = 858

 Score =  855 bits (442), Expect = 0.0
 Identities = 451/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatctcatacaattgttttaattgactgttttatatactttctttcatttatta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatctcataaaattgttttaattgactgttttatatactttctttcatttatta 264

                                                                       
Query: 65  caattactgctctggtacttttaatatcttccatattgggattttgctctttttgttaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caattactgctctggtacttttaatatcttccatattgggattttgctctttttgttaat 324

                                                                       
Query: 125 ccccttttcaccttttttattgccttctttcttcaatctgagagagtgtttcagtctgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccccttttcaccttttttattgccttctttcttcaatctgagagagtgtttcagtctgaa 384

                                                                       
Query: 185 aaagtaccccagactctctagttagtctttttgtgtagtgagatctgcattatttttcct 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagtaccccagagtctctagttagtctttttgtgtagtgagatctgcattatttttcct 444

                                                                       
Query: 245 gtattttataatattttattagaacatgcattccttcaggctcatttttgaaacagccac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtattttataatattttattagaacatgcattccttcaggctcatttttgaaacagccac 504

                                                                       
Query: 305 cttgttagtgaattttttagttcttgattttattatttatgatttatttcctgtggtgct 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgttagtgaattttttcgttcttgattttattatttatgatttatttcctgtggtgct 564

                                                                       
Query: 365 tatttctgttttggaaaatgtgaattaatactggagaaatattcctgatgcacagccaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatttctgttttggaaaatgtgaattaatactggagaaatattcctgatgcacagccaaa 624

                                             
Query: 425 cagaagtagcagtttcctgcacatacgaaatcca 458
           ||||||||||||||||||||||||||||||||||
Sbjct: 625 cagaagtagcagtttcctgcacatacgaaatcca 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_g21.g1 MSMg01no336_g21.g1 CHROMAT_FILE:
MSMg01no336_g21.g1 PHD_FILE: MSMg01no336_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:29 2005
         (423 letters)



>mm_chr11_39317914_39318736
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgagggaggaactgggactgagagcagcatttgggatgtaaacaaattaattatttaa 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgtgaaggaggaactgggactgagagcagcatttgggatgtaaacaaattaattatttaa 636

                                                                       
Query: 61  ttagttaattaaaatacaattaagagcaataaactaagagagaatgagagtagtgttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttagttaattaaaatacaattaagagcaataaactaagagagaatgagagtagtgttcca 576

                                                                       
Query: 121 ggatacaaagaaatatggtcatggcctgaaaataatctaattttccaagtaaagattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggatacaaagaaatatggtcatggcctgaaaataatctaattttccaagtaaagattctg 516

                                                                       
Query: 181 cccagttgaagacaaaattcagtgtataataaagaaaggattttggagggaaggggtagt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 accagttgaagacaaaattcagtgtataataaagaaaggattttggagggaaggggtagt 456

                                                                       
Query: 241 aggaaagaaaagagttggccgagcaactaagaacagtgtttgctttcacagagaatctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aggaaagaaaagagttggccgagcaactaagaacagtgtttgctttcacagagaatctgt 396

                                                                       
Query: 301 gtttgattcctacaaccatattgtgggtcacattgtctgtaaattcacccgattattgtc 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 395 gtttgattcctacaaccatattgtgggtcacattgtctgtaatttcacccgattattgtc 336

                                                                       
Query: 361 aaggcaggccttgcttgaactgtgaacctccttcattggcctccaacgtaatttgggaat 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 335 aaggcaggccttgcttgaactgtgaacctccttcattagcctccaacgtaatttgggaat 276

              
Query: 421 gca 423
           |||
Sbjct: 275 gca 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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