BAC Information

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BAC

Clone NameMSMg01-336O14
Chromosome11 (Build37)
Map Location 38,445,134 - 38,637,825
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039148, LOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336O14.T7 (MSMg01no336_o14.b1)MSMg01-336O14.TJ (MSMg01no336_o14.g1)
ACCAG451817AG451818
length729729
length of high quality
(start - end)		526 (45 - 570)502 (71 - 572)
definitionCHROMAT_FILE: MSMg01no336_o14.b1 PHD_FILE: MSMg01no336_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:07 2005CHROMAT_FILE: MSMg01no336_o14.g1 PHD_FILE: MSMg01no336_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,445,134 - 38,445,655)(38,637,326 - 38,637,825)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCAGTCATTCCGTTCCTTTACTTCAGTTCAGAGGCAATTTTATCTAGA
CAGTTTTATAGAGACAGATTGCAGAGAGAGCAGACTAGACAAGTATGCAG
ACAGAAGGAGCCAGAAGATTAGAAAGATTTGTACAAGCTAGTTGGAGGGC
AAGCAGAGTAATTCAGCGAGAAGCTGTGAGAAGCCAGTTTGGATCAGCCA
GCTTGAATAGGAGTTTAAGCCAGAAAAGCTGAGTTGAACCAGCCAGCCAG
AGGTCCGAAGGACCAAAAAAGGGTGAGCTTGGAGTTACATCTGACTCATA
AAAGCTACTTTTACATGCCTCTTCTACACAATGGTTCAAGTTTTTCTTTA
CATGCATGGCAAAAGATGGGCCTCTTAGAACATATGTTACCTCAAATTTA
ACTTTAATTTAACATGCATTCCCTAAACATTGTAATAATTTCAATTCCGA
CAAATATTGTGAAAGGTTTCTCTTTTATTTGCATACTCTCAGAGCAATTA
TCATATTACCCATTCTTACAATGGAGGTGATATACAATAACATTGTATTT
TTCTATTGGNATGATCTTGGTGATTAAAAATAGTGGCAGTTTTTAATCAC
CTCCTTGTGGTTTGATAGGATATTACATAAAAGAAGACACTTCTCACCCG
GGCATGGTGGCGCAGGGCTTTTATCCCCC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCTGGTTTTCTGTGCTTAGAGACATTTT
CTAACATGAAAAGAAGCTAGAAATTATGCTGACATGAAACAACCTTCTAG
CTACTTGTTTTCTTTATAAGTTCAGGTAGCAGTCATTCCATCTATAGATA
AATGCTCTTGAGTACAGGAATGTGGGTACCAAGGCAAGCCCTTCGGGGTA
ATCATTGTTTGCAACTTCCATCTGTCATTTATAACGTTTGTAATCTTGGT
TAGGCATTTCTTCTTGCAAAAAAAGAACTTTCCTCGTTGGCAAAATTTTC
TACCCTCTAGTAATACAAACTTCACAAGACTAATAGAATAATCATATGAG
GTATTTCTTAAGTCCAATGTCTCAATTACTCAGAAATTCAGGTATGTAAA
TATGTTCTAATAAAATCCAATTAATATACCTCTCCATCTATCTCTCCATG
AGTATTGCAAAATCCCTTACATGTTTTCCAGTTATCAAAATGCACCATGG
GAACTATCAGAAACACATAACGNTTTTCTCTATTATATATATCCATATAT
GTTTCTGCTTCTAAAAAAGTAATTGCAATTTTCTTTAGAGTATTATAATT
CCCCTGCTAAATTCTGCCTTCATTCTCCCTTAATGAAGATTTGGGTGTGG
GCGGAGCTTATCCAAACTACCTTTGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_o14.b1 MSMg01no336_o14.b1 CHROMAT_FILE:
MSMg01no336_o14.b1 PHD_FILE: MSMg01no336_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:07 2005
         (526 letters)



>mm_chr11_38444930_38445855
          Length = 926

 Score =  994 bits (514), Expect = 0.0
 Identities = 520/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcattccgttcctttacttcagttcagaggcaattttatctagacagtttta 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcactcagttcctttacttcagttcagaggcaattttatctagacagtttta 264

                                                                       
Query: 65  tagagacagattgcagagagagcagactagacaagtatgcagacagaaggagccagaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagagacagattgcagagagagcagactagacaagtatgcagacagaaggagccagaaga 324

                                                                       
Query: 125 ttagaaagatttgtacaagctagttggagggcaagcagagtaattcagcgagaagctgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttagaaagatttgtacaagctagttggagggcaagcagagtaattcagcgagaagctgtg 384

                                                                       
Query: 185 agaagccagtttggatcagccagcttgaataggagtttaagccagaaaagctgagttgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaagccagtttggatcagccagcttgaataggagtttaagccagaaaagctgagttgaa 444

                                                                       
Query: 245 ccagccagccagaggtccgaaggaccaaaaaagggtgagcttggagttacatctgactca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagccagccagaggtccgaaggaccaaaaaagggtgagcttggagttacatctgactca 504

                                                                       
Query: 305 taaaagctacttttacatgcctcttctacacaatggttcaagtttttctttacatgcatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaaagctacttttacatgcctcttctacacaatggttcaagtttttctttacatgcatg 564

                                                                       
Query: 365 gcaaaagatgggcctcttagaacatatgttacctcaaatttaactttaatttaacatgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaaaagatgggcctcttagaacatatgttacctcaaatttaactttaatttaacatgca 624

                                                                       
Query: 425 ttccctaaacattgtaataatttcaattccgacaaatattgtgaaaggtttctcttttat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttccctaaacattgtaataatttcaattccgacaaatattgtgaaaggtttctcttttat 684

                                                     
Query: 485 ttgcatactctcagagcaattatcatattacccattcttaca 526
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgcatactctcagagcaattatcatattacccattcttaca 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_o14.g1 MSMg01no336_o14.g1 CHROMAT_FILE:
MSMg01no336_o14.g1 PHD_FILE: MSMg01no336_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:07 2005
         (502 letters)



>mm_chr11_38637126_38638027
          Length = 902

 Score =  920 bits (476), Expect = 0.0
 Identities = 494/500 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctggttttctgtgcttagagacattttctaacatgaaaagaagctagaaattatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cttctggttttctgtgcttagagacattttctaacatgaaaagaagctagaaattatgct 641

                                                                       
Query: 61  gacatgaaacaaccttctagctacttgttttctttataagttcaggtagcagtcattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gacatgaaacaaccttctagctacttgttttctttataagttcaggtagcagtcattcca 581

                                                                       
Query: 121 tctatagataaatgctcttgagtacaggaatgtgggtaccaaggcaagcccttcggggta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 580 tctatagataaatgctcttgagtacaggaatgtgggtaccaaggcaagcccttcagggta 521

                                                                       
Query: 181 atcattgtttgcaacttccatctgtcatttataacgtttgtaatcttggttaggcatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atcattgtttgcaacttccatctgtcatttataacgtttgtaatcttggttaggcatttc 461

                                                                       
Query: 241 ttcttgcaaaaaaagaactttcctcgttggcaaaattttctaccctctagtaatacaaac 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aacttgcaaaaaaagaactttcctcgttggcaaaattttctaccctctagtaatacaaac 401

                                                                       
Query: 301 ttcacaagactaatagaataatcatatgaggtatttcttaagtccaatgtctcaattact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcacaagactaatagaataatcatatgaggtatttcttaagtccaatgtctcaattact 341

                                                                       
Query: 361 cagaaattcaggtatgtaaatatgttctaataaaatccaattaatatacctctccatcta 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 340 cagaaattcaggtatgtaaatatgttctaataaaatccaattaatatacctccccatcta 281

                                                                       
Query: 421 tctctccatgagtattgcaaaatcccttacatgttttccagttatcaaaatgcaccatgg 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 tctctccatgagtattgcaaaattccttacatgttttccagttatcaaaatgcaccatgg 221

                               
Query: 481 gaactatcagaaacacataa 500
            |||||||||||||||||||
Sbjct: 220 aaactatcagaaacacataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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