BAC Information

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BAC

Clone NameMSMg01-337O23
Chromosome11 (Build37)
Map Location 102,584,353 - 102,584,814
singlet/doubletsinglet
Overlap genenone
Upstream geneDhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43
Downstream geneAdam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337O23.T7 (MSMg01no337_o23.b1)MSMg01-337O23.TJ (MSMg01no337_o23.g1)
ACCAG452589AG452590
length787775
length of high quality
(start - end)		469 (44 - 512)417 (71 - 487)
definitionCHROMAT_FILE: MSMg01no337_o23.b1 PHD_FILE: MSMg01no337_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:27 2005CHROMAT_FILE: MSMg01no337_o23.g1 PHD_FILE: MSMg01no337_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTCCTATGCATGGACAGGTTCCTTTGGACTGTTGTAAAGATGTTG
AAAGCATGACTGTTCTGTAGTACTACTGAGACAAAAAATGAATGGGGCTC
TGACAGGTCCCGAGAGAGGCTGAGAAGTGGGCTAGTCTCATAGCTAATTT
CATCAATATGTTATAATGAGCATAACAAGCAGATTTGAGTTTAATTAATC
TGGTCCCCACATCCAACCAAATGCCTTGCCACAATAAGAGGGATACCATC
TGAATAGTTCCTTTACATCAAGAAAAACTCAAAAGGTGAGCTGGGTGTGA
TCACCCACGGCTTCACGCCCAACAATTGGGATGCAGAGGTTCATGGATCT
CTGTGAGTTTGGTCTACACAGTCAGTTTCAGACTACAGAATAAGACCCTG
TCTCAAAAGAAGAATAAACAAAGCTAGGCAGTAATGCAAACCATTAATCC
CAGCACTCANGAGGCAGAGGCTGAGGCAGGAGGATCTCTATGAGTTCAAG
GGCCACATGGTCTACAGAGTGAATTTCCAGATAGCCAGGGCTACATAGCC
AAACCCTGTCTCNNAATTAAAATAAATTAAATTAAATTATAATACCGGAG
CAAAAACTAAAAGGACCTTAAACTTCCTTTCGATTTAGGGTACAAGCCAA
CCCGGAAAGTTTTATTTTGAAAGCTCCCCTGATCTGGGGGGAATTGGAAA
AAAATTACCAAATGGAAAATGGGGGAAGCCCCAATGA

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCCAGCCAGGACAGTCGGAGTTACAGA
GTGAAACCCTGTCACAAGAAAACAACAACAAGCCCCCCTCAACAACAAAC
AAACAAGCAAACATAAGCTGTTGTGTTGCACAGCTTTCATCTCAGCACTC
AGGAGGCAGAGGCAAGAGGATCTCTGAGTTTGAGACCAGCCTCGTCCACA
GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAA
AAAAAAACAACTAACCAGCCAATCTACCAGAGGAAACTGTTTTGCACGAA
AAGTGTCCCTCATAGGCCCTTGTATCTGAATACTCAATCCACAAATGGTT
GTACTGTTTGGGAAGGCTACAAAACTTTTAGAAGGTGGAGCCTTGCTGGA
GGAAGTAAGTCCCTCATGAACGTGGTGATCCCCAGGAGAGGAGCAGTGCT
CCCTGTACTCTCANGAAAGCATGAGGAAGAAGGACCCCCTTCCCTGTGGA
ACCGAGAGAGCAGATAAATACTGGGTCATGGACTCTCCCCAGAGGGCCAT
CACAATGGAACTAACGGGAAAAGAAGGACCAGGGGGAAAAAGGAAACTGA
ATACCCCCTTTCCACAAAAAAATTGGCTCATCCCCCCCGGGCCCCTTACC
GGAATTAAAAAAAAAATTGGGGTGGGGTCTAAGAACCAAAAAACCCTTAG
CCCCCCACCCAATCTTGGTAAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_o23.b1 MSMg01no337_o23.b1 CHROMAT_FILE:
MSMg01no337_o23.b1 PHD_FILE: MSMg01no337_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:27 2005
         (469 letters)



>mm_chr11_102584320_102585188
          Length = 869

 Score =  839 bits (434), Expect = 0.0
 Identities = 455/462 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctcctatgcatggacaggttcctttggactgttgtaaagatgttgaaagcat 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaattcttctcctaggaatggacaggttcctttggactgttgtaaagatgttgaaagcat 436

                                                                       
Query: 65  gactgttctgtagtactactgagacaaaaaatgaatggggctctgacaggtcccgagaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 435 gactgttctgtagtactactgagacaaaaaatgaatggggctctgaccggtcctgagaga 376

                                                                       
Query: 125 ggctgagaagtgggctagtctcatagctaatttcatcaatatgttataatgagcataaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggctgagaagtgggctagtctcatagctaatttcatcaatatgttataatgagcataaca 316

                                                                       
Query: 185 agcagatttgagtttaattaatctggtccccacatccaaccaaatgccttgccacaataa 244
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 315 agcagatttgagttcaattaatctagtccccacatccaaccaaatgccttgccacaataa 256

                                                                       
Query: 245 gagggataccatctgaatagttcctttacatcaagaaaaactcaaaaggtgagctgggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gagggataccatctgaatagttcctttacatcaagaaaaactcaaaaggtgagctgggtg 196

                                                                       
Query: 305 tgatcacccacggcttcacgcccaacaattgggatgcagaggttcatggatctctgtgag 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 195 tgatcacccacggcttcacgcccaacaattgagatgcagaggttcatggatctctgtgag 136

                                                                       
Query: 365 tttggtctacacagtcagtttcagactacagaataagaccctgtctcaaaagaagaataa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tttggtctacacagtcagtttcagactacagaataagaccctgtctcaaaagaagaataa 76

                                                     
Query: 425 acaaagctaggcagtaatgcaaaccattaatcccagcactca 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  acaaagctaggcagtaatgcaaaccattaatcccagcactca 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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