BAC Information

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BAC

Clone NameMSMg01-338A04
Chromosome11 (Build37)
Map Location 100,802,704 - 100,803,066
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3
Downstream genePtrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338A04.T7 (MSMg01no338_a04.b1)MSMg01-338A04.TJ (MSMg01no338_a04.g1)
ACCAG452646AG452647
length741755
length of high quality
(start - end)		589 (43 - 631)418 (68 - 485)
definitionCHROMAT_FILE: MSMg01no338_a04.b1 PHD_FILE: MSMg01no338_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:33 2005CHROMAT_FILE: MSMg01no338_a04.g1 PHD_FILE: MSMg01no338_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAGTCTTTCTCAGTCTCACAGACTATCTGTGACCCAGGAGAGGTTAA
GAGTCATTGATTCTTCTCGCCAGAAATTAATAACGATATCTATCTTTAGG
GAAATAGACTGATGGAGGAAGAAGGTGAAGATTTTTATTAAAAAAAATTT
CAACCTAGCTGGGCAGTGGTGGCACACGTCTTTAATCCCAGCACTTGGGC
AGCAAGAGGCAGGTGTGTATCTCTAAGAGTTTGAAGCCAGACTGGTCTTC
AAACTGAGTTTCAGGTCTGTTCAAAGCTACACAGAGAAACCCTGTCTCGA
AAAACAAACAGACATGGCTGGAGAGATGGCTCCGTAGTTAAGAGCACTGC
TCTTCCAGAGGTCCTAAGTTCAGTTCCCAGTTACCATATTGTGGCTCACA
ACCGTCTGTAATGGGCATCTGATGCCCTCTTCTGGTGTGTCTGAAGTATA
TAGCTACAGTGTACTCATATAAATAAACAAATCTTTAAAAACAGAAAAAT
CTGCAGCCTTCCACAGGTGTGGGAGGAATGTTTTCAATCTCAGCTCACTC
AGGAGATAGAGGCTGGAAAAAAATCTCTGAGATCCTAAGATCCTGTCTCA
AGAATACAGGATACTAGTAAGAAAACAAAAACCTGAAGTTTCCTGAACTG
TGTATATTAGCTGTGTTTTAAAATATACCATTGGGGGATTA

GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGATCCTCCTGCCAATACTTCCAGAGAGCTGG
GATTACAGTCAGGCCACCACGCCCAGTTTAATGCAGTGTTGAGTTGGAAT
TTATGGCTTTAATATTCTAGGCAAAAACTTTACCAAGTTAGCTATATTTC
CAGTCCCTGTGAATCCCAGCTTAAGTTCTTTTTTTCTCCTCAAATTAAAT
ATTATATTGCTATTGTTGTTTTATGAAGCAGGGTTTCTCTGTGTAGCCTT
GGCTGTCCTGAGATTTTTTCTGTAGAACAGGCTGGCCTCAAATTTAGAGA
TCCACCTGCCTGTGCCTCCTGAATGCTAGGACTAAAGACATGCACCACCA
CCACCTGGCTAAAGATTTTTTCTTTTTTTAGTTTATTTTTGATTTTTTTT
TAAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACA
CCAGAAGAAGGCGTCAGATCTCATTACCATGGTTGTGAGCCACCAGGTGG
CTCGCCGCGATTTGAAATTCGGGACCTTTGTAGGACTAGTCGGCCGCTCC
TAGCCGGTGCAACCTTCTCCCCATGCCCCCTTTTTTTCATTTTCCACGAT
TTATTTCATTTTGCGGATAATGAGATCAAATCCTTGTGTGCCCTTGTGTT
CGCGATCACACCCTCTACATTTTACGTTCCACCTACTGGTTATCTCATAT
TATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_a04.b1 MSMg01no338_a04.b1 CHROMAT_FILE:
MSMg01no338_a04.b1 PHD_FILE: MSMg01no338_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:33 2005
         (589 letters)



>mm_chr11_100802704_100803691
          Length = 988

 Score =  644 bits (333), Expect = 0.0
 Identities = 357/365 (97%), Gaps = 2/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagtctttctcagtctcacagactatctgtgacccaggagaggttaagagtca 64
           ||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 363 gaattcatagtctctgtcagtctcacagactatctgtgacccaggagaggttgagagtca 304

                                                                       
Query: 65  ttgattcttctcgccagaaattaataacgatatctatctttagggaaatagactgatgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttgattcttctcgccagaaattaataacgatatctatctttagggaaatagactgatgga 244

                                                                       
Query: 125 ggaagaaggtgaagatttttattaaaaaaaatttcaacctagctgggcagtggtggcaca 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggaagaaggtgaagatttttatt-aaaaaaatttcaacctagctgggcagtggtggcaca 185

                                                                       
Query: 185 cgtctttaatcccagcacttgggcagcaagaggcaggtgtgtatctctaagagtttgaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cgtctttaatcccagcacttgggcagcaagaggcaggtgtgtatctctaagagtttgaag 125

                                                                       
Query: 245 ccagactggtcttcaaactgagtttcaggtctgttcaaagctacacagagaaaccctgtc 304
           ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||
Sbjct: 124 ccagactggtcttcaaactgagtttcaggtcag-ccaaagctacacagagaaaccctgtc 66

                                                                       
Query: 305 tcgaaaaacaaacagacatggctggagagatggctccgtagttaagagcactgctcttcc 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tcgagaaacaaacagacatggctggagagatggctccgtagttaagagcactgctcttcc 6

                
Query: 365 agagg 369
           |||||
Sbjct: 5   agagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space:   566262
Effective search space used:   566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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