BAC Information

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BAC

Clone NameMSMg01-338E15
Chromosome11 (Build37)
Map Location 52,621,726 - 52,622,032
singlet/doubletsinglet
Overlap geneFstl4
Upstream genePhf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338E15.T7 (MSMg01no338_e15.b1)MSMg01-338E15.TJ (MSMg01no338_e15.g1)
ACCAG452858AG452859
length777732
length of high quality
(start - end)
264 (22 - 285)370 (323 - 692)
definitionCHROMAT_FILE: MSMg01no338_e15.b1 PHD_FILE: MSMg01no338_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:53 2005CHROMAT_FILE: MSMg01no338_e15.g1 PHD_FILE: MSMg01no338_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATAGTTCCAGGATCCGCGGAATTCTTCATACATTGCCGCTATC
AATCCACTGATGACAAGCTGGCAAAGATTTTCCCTTCTATTCTGTAATTT
TTTAAAAAAAGATTTATTTATTTTACTTGTATATAAGAGTACACTGTAGC
TGTTTTCAGACATACCAGAAGAGGGCATCGGATCCCATTACAGATGATTG
TGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTCTGGAAGAGC
AATCAGTGCTCTTAACTGCTGAGCCATCCCTCCAGCCCCTCTATTCTGTA
TTTTGCTCTTCACTCTGGTAACTGACTCCTTACTCTGCACAGACATTTAT
GGCTTGCAGGTATCCCCCTCGTTTTCCGAGCGGGAAAAAACCTTCCATTT
CCGGAAGCCTTGGCCCAGGGGGCCTTAATAAGGAATGGGCCTTTCCCAGG
GCCCTTTAAGGGGAGGGTGGAAAACCCCCTAAAAGGAAACTTTAAAAAAA
AAAAGGGGTTCCCCCGGAAGCCCCCCCCCCCGTGTGGGGGAAGGGCACAA
AAACCGGGGTCCCCCAAATTTTCTGGGGGGGGTTTAACAAACGCCCCACC
GGTGGTAAAACCCCCCCTAAAAAAACCCCCCCGGGGGGGGGGGAATTTCA
CCCCCCCTCCGGGTGGAAAAAAACCTTGCGCCCGAGAAGAAATGTTGTGC
CCCCACCCCTTTTTTTTTTACCCCCCCCCCGCCGATATATTTAGTGGGCT
GCTCTTTTCTCTTTTTTATTTACCCTG
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAAGAATGGCTTTTAAAAATCTATAAA
TTCCAAGAAAAAATGCATGGAAACAGCTGGAAAAATTAAGGAATACAATG
TAGAATACTATGGGTCACTCAATAAAGGGAGGTGGCGAGAAACAGAAATC
TTATAAATGGAAAGCTCACTGAGTCAAATAAAAAAACTCACTCAAAGCCA
GTAAATGAGATTAAGCAGAAAAGAGGATTTAAGATTTTGAAAACAAAGTT
GAGAAATGAAGATATCCTAACAAATTAAGAGAAAATAAAATAACTTATGA
ACAGGCATATAAGAAATTATGACATGATTAAAAGACCAAACTGATTTTTG
ATATATTATAAAGTGATATGGAACTCACAAAAAGCCATACAAAGATATAT
TTACAAAATAATAGCAGATATTTCCCCAAATCTTGAGAAAGATATGAATA
TCTAGGTGTAGGAGGTATTGAGAAACAGAACAGACACACCAGACTACACA
ATGAAGAATGCACACTGAAAACTATAAGAAATAATAAGAAACAAATACAA
CTCACTACACAGGTAAACCCAGAATAACTATAGATTTTTTTAAACACAAA
CTTTTAAGGACAGGAGCACATGGACCAATGTATACCAAATCCTGGAAGAA
AACAACTTCTAAACTACATTACTGTAGGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_e15.g1 MSMg01no338_e15.g1 CHROMAT_FILE:
MSMg01no338_e15.g1 PHD_FILE: MSMg01no338_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:53 2005
         (370 letters)



>mm_chr11_52621726_52622495
          Length = 770

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaagagaaaataaaataacttatgaacaggcatataagaaattatgacatgattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aattaagagaaaataaaataacttatgaacaggcatataagaaattatgacatgattaaa 248

                                                                       
Query: 61  agaccaaactgatttttgatatattataaagtgatatggaactcacaaaaagccatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agaccaaactgatttttgatatattataaagtgatatggaactcacaaaaagccatacaa 188

                                                                       
Query: 121 agatatatttacaaaataatagcagatatttccccaaatcttgagaaagatatgaatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agatatatttacaaaataatagcagatatttccccaaatcttgagaaagatatgaatatc 128

                                                                       
Query: 181 taggtgtaggaggtattgagaaacagaacagacacaccagactacacaatgaagaatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 taggtgtaggaggtattgagaaacagaacagacacaccagactacacaatgaagaatgca 68

                                                                       
Query: 241 cactgaaaactataagaaataataagaaacaaatacaactcactacacaggtaaacccag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  cactgaaaactacaagaaataataagaaacaaatacaactcactacacaggtaaacccag 8

                  
Query: 301 aataact 307
           |||||||
Sbjct: 7   aataact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)