NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCG
CGGAATTCATAGCATGTGTCTGCATTTTTGTCTAGATATATGTAATGTAC
ACTTGGGCATTTGTGCACCCATGCATATTTTCAAAGGTTACAATAAATAT
TTCCAAATGTATAATATTTAATGTTTATTCAATCTATAAAATTTATTCCT
ATTTATTTAAAATAATCTTCATTCTCATAAATTTTGTAGATTGAAGAGTA
GCTTTTATTACATAATAGTTTAAAATATGTGTAGTTCAGTTTTTTAAATT
TTAGAATTTGGGAAAATGTCAACTGAGTCTATTTTAATCATTTTAAACAT
TCTTTCCAAGATTTTAAAGAATGGGTTTCAAACTGTTTTATATTTGTCTG
TTCTTCTGAAGGCATTAATATGAAATATTCTCATATGAAAATATTCCCTC
AGCTTCCTATTTAAATTATTGAATTTCTATAGTAACTTTTTCATTAGAGA
ATTCACTTTGGCTATGTTCAAAATACTTCATGCTCAGCAAGAATGTATTC
TAAATTAATACATTTTTAATTTTTTATCTTGATTCATTTATTTACCATGG
CTTCAAACCCAGTGAATACATTTAGCATGCAAGTAGAGTTACTTTGCAAT
GGGGGTACCCCTGCAAAAAGCTGCTGCATAGTTTTCTTGATTGCAAAGGC
CTCATGTAGCTAGGTGTTGAAAAGTGGAGACTTCTAGAGGTAAAN

CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATAGTAAAAGCAATACAC
AGCAATCCAGCAGTCAACATCAAACTAAATGGATAGAAACTTGAAACAAT
CCCACTAAAATCAGGCACTAGACAAGGTTGCCCATTCTCTCCCTACCTAT
TCAATATANTACTGAAAGTTCTAGCTAGAGCAATTAGACAACAAACGGAG
GTCACGAGGGATACAAATTGGACTCGAAGAGGGGCGGGGAGGGAGTGGGC
CATGCAATGATAGTACACTTAAGTGACCCCAAATATTCCATCAAAGAACT
CTTAAAGCTGATAAAAAAAAAAAAAACTCANCCAACTGGCTGGATATAAA
TTAACTCTAACAATCANTAAGCTTCCCCTACTGAAAGGAAAACAGTCTGA
AAAAGAAATCCAAAAATGACCCCTTTCCAAAAATCCCAAAAAAATTACTT
GCCTGGGGGTGCCTTAACCAGCAAATAAAAAATTGGATGAAAAAAACTTC
AATCCCTGAAAAATTTAAAAAAATCCAAAAAAGGAAAAATTCCCCCTGCT
TTTAAAAGGGCGGTTTAAAAAAAAAAAAAGGCCCTTTTTTGAAAGCTATC
CCAAAAATTCGTGGCCCCCCCCCAAAATTCCAAAAAATTTTCTTTAAAAT
TAAAAAAAAAAATTTTCCACTCTTTTTTGGGAAAAAAAAAAA

Query= MSMg01no339_d01.b1 MSMg01no339_d01.b1 CHROMAT_FILE:
MSMg01no339_d01.b1 PHD_FILE: MSMg01no339_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:58 2005
         (674 letters)



>mm_chr11_26881792_26882865
          Length = 1074

 Score = 1268 bits (656), Expect = 0.0
 Identities = 665/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcatagcatgtgtctgcatttttgtctagatatatgtaatgtacacttgggcattt 66
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatagcatgtgtatgcatttttgtctagatatatgtaatgtacacttgggcattt 266

                                                                       
Query: 67  gtgcacccatgcatattttcaaaggttacaataaatatttccaaatgtataatatttaat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtgcacccatgcatattttcaaaggttacaataaatatttccaaatgtataatatttaat 326

                                                                       
Query: 127 gtttattcaatctataaaatttattcctatttatttaaaataatcttcattctcataaat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtttattcaatctataaaatttattcctatttatttaaaataatcttcattctcataaat 386

                                                                       
Query: 187 tttgtagattgaagagtagcttttattacataatagtttaaaatatgtgtagttcagttt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttgtagattgaagagtagcttttattacataatagtttaaaatatgtgtagttcagttt 446

                                                                       
Query: 247 tttaaattttagaatttgggaaaatgtcaactgagtctattttaatcattttaaacattc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttaaattttagaatttgggaaaatgtcaactgagtctattttaatcattttaaacattc 506

                                                                       
Query: 307 tttccaagattttaaagaatgggtttcaaactgttttatatttgtctgttcttctgaagg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttccaagattttaaagaatgggtttcaaactgttttatatttgtctgttcttctgaagg 566

                                                                       
Query: 367 cattaatatgaaatattctcatatgaaaatattccctcagcttcctatttaaattattga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cattaatatgaaatattctcatatgaaaatattccctcagcttcctatttaaattattga 626

                                                                       
Query: 427 atttctatagtaactttttcattagagaattcactttggctatgttcaaaatacttcatg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atttctatagtaactttttcattagagaattcactttggctatgttcaaaatacttcatg 686

                                                                       
Query: 487 ctcagcaagaatgtattctaaattaatacatttttaattttttatcttgattcatttatt 546
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctcagcaagaatgtatcctaaattaatacatttttaattttttatcttgattcatttatt 746

                                                                       
Query: 547 taccatggcttcaaacccagtgaatacatttagcatgcaagtagagttactttgcaatgg 606
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 taccatggcttcaaatccagtgaatacatttagcatgcaagtagagttactttgcaatgg 806

                                                                       
Query: 607 gggtacccctgcaaaaagctgctgcatagttttcttgattgcaaaggcctcatgtagcta 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gggtacccctgcaaaaagctgctgcatagttttcttgattgcaaaggcctcatgtagcta 866

                   
Query: 667 ggtgttga 674
           ||||||||
Sbjct: 867 ggtgttga 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)