Query= MSMg01no339_h17.b1 MSMg01no339_h17.b1 CHROMAT_FILE:
MSMg01no339_h17.b1 PHD_FILE: MSMg01no339_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:19 2005
(704 letters)
>mm_chr11_44919297_44920402
Length = 1106
Score = 1272 bits (658), Expect = 0.0
Identities = 691/702 (98%), Gaps = 2/702 (0%)
Strand = Plus / Minus
Query: 5 gaattctttttatgtcctcaagctttttcaccctgctgtttagaaaattccacattttcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaattctttttatgtcctcaagctttttcaccctgctgtttagaaaattccacattttcc 847
Query: 65 aacaggggcatctgtggtgtgtcaccatgtggggaaaacaaatagaatttataaaacatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aacaggggcatctgtggtgtgtcaccatgtggggaaaacaaatagaatttataaaacatt 787
Query: 125 ggaaaactagtttgacttaaagaaaaagtgcaatcgatcaatatagaagaggaggggaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ggaaaactagtttgacttaaagaaaaagtgcaatcgatcaatatagaagaggaggggaaa 727
Query: 185 gaatggagagagctacagggtgacatccatctttgccccataaccaagcccagagaaaga 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaatggagggagctacagggtgacatccatctttgccccataaccaagcccagagaaaga 667
Query: 245 acttagctcagagttgatgatgggcaagagagttgggtagattgggatcatcagtgtatg 304
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 666 acttagctcagagttgatgatgggcaagagagttgggtagattggggtcatcagtggatg 607
Query: 305 aagacagtttgcagacccaagagttgggtttttt-ctgaagtcttctgaaagttattaaa 363
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 606 aagacagtttgcagacccaagagttggttttttttctgaagtcttctgaaagttattaaa 547
Query: 364 gctttgggttgttttcactgctgtggtggctgacctgtgttcctttgcgtgtattgtttt 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 546 gctttgggttgttttcactgctgtggtggctgacctgtgttcctttgtgtgtattgtttt 487
Query: 424 gtttgctacaccaggacttgaactcttacagctagctcc-catctggaaatcatgtgtgc 482
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 486 gtttgctacaccaggacttgaactcttacagctagctcctcatctggaaatcatgtgtgc 427
Query: 483 tatgctgcacacatactctaaggggagattcagaagagcattagaattagtttacaatat 542
||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 426 tattctgcacacatactctaaggggagattcagaaaaacattagaattagtttacaatat 367
Query: 543 gatgggtaaggaggtctggagttcagcgtgggtgtggcaagaggcagaaacttctaagcc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gatgggtaaggaggtctggagttcagcgtgggtgtggcaagaggcagaaacttctaagcc 307
Query: 603 atctattatgcaaacacttttgagaataaagaccacaggtttagggagatgtttcagtgg 662
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 306 atctattatgcaaacacttttgagaataaagaccacaggtttagggagacgtttcagtgg 247
Query: 663 gcaaagtgattgccctacacgcataagaatttgaacattgta 704
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gcaaagtgattgccctacacgcataagaatttgaacattgta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1106
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1096
Effective search space: 760624
Effective search space used: 760624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no339_h17.g1 MSMg01no339_h17.g1 CHROMAT_FILE:
MSMg01no339_h17.g1 PHD_FILE: MSMg01no339_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:19 2005
(564 letters)
>mm_chr11_44899024_44899987
Length = 964
Score = 1075 bits (556), Expect = 0.0
Identities = 563/566 (99%), Gaps = 2/566 (0%)
Strand = Plus / Plus
Query: 1 ctcatgggttcttgtgagttaatatatggaaagctctcttggaacagctttcaacagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctcatgggttcttgtgagttaatatatggaaagctctcttggaacagctttcaacagagg 258
Query: 61 ggatagatagagatgtgtgattatgagtgtgcgtgtgcatgtgtatagaaatggagaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggatagatagagatgtgtgattatgagtgtgcgtgtgcatgtgtatagaaatggagaaat 318
Query: 121 atattgcaccctcttttaaaatgttttgttttaatatgtgtaagtatatgtctctgtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atattgcaccctcttttaaaatgttttgttttaatatgtgtaagtatatgtctctgtatg 378
Query: 181 ggaatatttgaacatgactgcagttgcctgttgagtcctgaagaggacactgaattgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggaatatttgaacatgactgcagttgcctgttgagtcctgaagaggacactgaattgcat 438
Query: 241 ggagctggagttacatgtggttatgtaccccacccccagtactgtaagtgctggcatcca 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 ggagctggagttacatgtggttatgcaccccacccccagtactgtaagtgctggcatcca 498
Query: 301 aactctgatcctttgctaaagcaggaaatgctgttaactctggagccatctcttcatctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aactctgatcctttgctaaagcaggaaatgctgttaactctggagccatctcttcatctc 558
Query: 361 ctcttatctttctttatggcttatacatgtatatatata--catacatacacatatatgc 418
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 ctcttatctttctttatggcttatacatgtatatatatatacatacatacacatatatgc 618
Query: 419 acctatatatacaaatatgcacctatattcatatatatgcccttgaaatagttctatcta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acctatatatacaaatatgcacctatattcatatatatgcccttgaaatagttctatcta 678
Query: 479 tatattctatgtattaatgtatcaactgtcctatctctgctgaaactaatcctgtaaaat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatattctatgtattaatgtatcaactgtcctatctctgctgaaactaatcctgtaaaat 738
Query: 539 ttatgaatttaccttacattttctga 564
||||||||||||||||||||||||||
Sbjct: 739 ttatgaatttaccttacattttctga 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
