Query= MSMg01no339_i10.b1 MSMg01no339_i10.b1 CHROMAT_FILE:
MSMg01no339_i10.b1 PHD_FILE: MSMg01no339_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:22 2005
(495 letters)
>mm_chr11_4648663_4649553
Length = 891
Score = 897 bits (464), Expect = 0.0
Identities = 484/492 (98%), Gaps = 4/492 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttccatgtgcataagaacagtcactggggggtgttgtaggggtgatctgcaag 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttccatgggaataagaacagtcactggggggtgttgtaggggtgatctgcaag 263
Query: 64 caccttacttgctaagcctttctagacagtttgctattgggctaagggagagagctggag 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 caccttacttgctaagcctttccagacagtttgctattgggctaagggagagagctggag 323
Query: 124 tctgctatcagactggcaggaaacactctctcttggagcgttcttgggaggcttccctga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgctatcagactggcaggaaacactctctcttggagcgttcttgggaggcttccctga 383
Query: 184 agcctagctgcccagccagggaaatctcaaaagaagaaggggcaaaaagaaatcaagaac 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384 agcctagctgcccagccagggaaatctcaaaagaag---gggcaaaaagaaatcaagaac 440
Query: 244 taatcaagtgggaacccttcacagaccaggccctgggagtctgctgaaggtacaggtgtc 303
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatcaagtgggaatccttcacagaccaggccctgggagtctgctgaaggtacaggtgtc 500
Query: 304 cctggattcaggggctgccccccaccccggacattaaccttggtccgaatccaaagggtc 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggattcaggggctgccccc-accccggacattaaccttggtccgaatccaaagggtc 559
Query: 364 aaggtgtccagtcatgtgaccagggtactccccagggcaggtagcctccagatcaaagtg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaggtgtccagtcatgtgaccagggtactccccagggcaggtagcctccagatcaaagtg 619
Query: 424 gcagataacgaaagatagctttagtatcatagtttaccacactctctagggtcatctttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcagataacgaaagatagctttagtatcatagtttaccacactctctagggtcatctttg 679
Query: 484 acatttcagtcc 495
||||||||||||
Sbjct: 680 acatttcagtcc 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 891
Length adjustment: 10
Effective length of query: 485
Effective length of database: 881
Effective search space: 427285
Effective search space used: 427285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_i10.g1 MSMg01no339_i10.g1 CHROMAT_FILE:
MSMg01no339_i10.g1 PHD_FILE: MSMg01no339_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:23 2005
(503 letters)
>mm_chr11_4811556_4812458
Length = 903
Score = 861 bits (445), Expect = 0.0
Identities = 480/503 (95%), Gaps = 18/503 (3%)
Strand = Plus / Minus
Query: 1 ctgtcccacacattactgactttgtgacctggaagataaacttactgacgtgaggaggct 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctgtcccacacattactgagtttgtgacctggaagataaacttactgacgtgaggaggct 735
Query: 61 cagttcccacagctataaaagagagactgggggctagtagctgttaagcggcaggagacc 120
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 734 cagttcccacagctataaaagagagactggg------------------ggcaggagacc 693
Query: 121 aatgcactgggctgcatccttacatacagtagacttggctgaggcatgcagccctgaaga 180
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agtgcactaggctgcatccttacatacagtagacttggctgaggcatgcagccctgaaga 633
Query: 181 gtagagttagcatgcagacggctgcggctctgatcccagcaccacacaagtgaacctaca 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 632 gtagagttagcatgcagacggctgcggctctggtcccagcaccacacaagtgaacctaca 573
Query: 241 cactctaaagtctcacaaccgtatgcagcatactagtagtacagacgtgtagagaaactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cactctaaagtctcacaaccgtatgcagcatactagtagtacagacgtgtagagaaactt 513
Query: 301 agtgtcatgaagtaacaaaccacactcaggacacagagcacagtccacttcaggctgact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agtgtcatgaagtaacaaaccacactcaggacacagagcacagtccacttcaggctgact 453
Query: 361 ggagtgagcttgtctctcaagcactcagcaacaatctgctccactctgcctatgtgacac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggagtgagcttgtctctcaagcactcagcaacaatctgctccactctgcctatgtgacat 393
Query: 421 gagtcgtccgtctcttggtatgttactgtggaactctgggatcctactgcggtgagcaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gagtcgtccgtctcttggtatgttactgtggaactctgggatcctactgcggtgagcaag 333
Query: 481 taagacactctggtttctctgcc 503
|||||||||||||||||||||||
Sbjct: 332 taagacactctggtttctctgcc 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
