NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATTATCTAATAATGTTCTTCACCGATTCTTTAATGTAATTT
TTTCACTTCTCTTCCACACTGATATTTTTCTTCTATTTGATCAACTATAC
TTGTGATGGCTTCCCTTGGTTTTTATTTAAATTATTGAGATGATAATTTC
CAACATTTCTATTTTTTCCAAAATACCCATTTTCTTGGTGAATTTCTCAT
TCATGCTATTGACTTTTTAATCCATGTTGTTGATTTTCTCAGTAGTTTTG
TTGAGTTTCTCATCTGTGCTGTTGATTTTTCTCCCAAGATTACAGGTTGA
ATTCATCTGCTTGGTTTTACCACTTTGAATACTTAATCATGATTACTAGT
AAACATTTAAATTCTCAATCCAACTATTTTCCCAACTAATATCTTTAAAT
TCATAAATTGATAAATTATATTTTTGTTTTGTTTTGTTTTCCATGCTTCT
TAGTATTCTATGTTATAATTTTGTGTCCCTTGCTTTTGGTTCTTCTGCTG
GTTTTATTAGGGGATTTTCTCAATGGGCACCCATTATAGCTGTCATCACC
ACTAGCTCTTAGAAAGAATAAAATGAGCCTACCCCTTTCATTGCCAGGAT
GTTGTCTGGACTGGGCATGTGTTTTACTTCACTTTCTTCTTTTCATATAT
AGTTTCATTGAAAAAAAACAACCTTTTCCTACAGT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACATTCTTTCCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTT
TTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTT
TCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTT
TCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTCCCTTCCCTTCCCTT
CCCTTACCTTACCTTCCCTTCCCTTCCCTTCCCTTTCCTTTCCTTTTCTA
TTCTTTTCTTTTTTTACAAATTTTATTAGATATTTTCTCCATTTACAACT
CAAATGCTATCCTAAAAGTCCCTTATACCCTCCCCTCACCCTGCTCTCCA
ACCCACCCACTCCCACTACCTGGGTCTGGTATTCCTCTGTATTGAGGCAT
ATAAGCCTTGCAAGACCAAGGGTCTCTCTTAGCAATGATGGCGGACTAGG
CCATCTTCTGTTACATATGCAGCTAGAGACACGAGCTCTGGGGGTACAGG
TTAGTTCATATTGCTGTTCTACCTATAGGGTAGCAGAACCCTTCAGCTCC
TTGGGTACTTTCTCTAGCTCCTCCATTGGGTGCTCTGTGTTCCACCCATA
GAGGAAGGGGAGAATTCCCTTCTGTGCTTGCCAGGGATGGGCTAAACCCA
ATAAAGCAGTAATATAAGGGGC

Query= MSMg01no339_n12.b1 MSMg01no339_n12.b1 CHROMAT_FILE:
MSMg01no339_n12.b1 PHD_FILE: MSMg01no339_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:46 2005
         (557 letters)



>mm_chr11_10675279_10676235
          Length = 957

 Score =  998 bits (516), Expect = 0.0
 Identities = 544/554 (98%), Gaps = 4/554 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgattatc-taataatgttcttcaccgattctttaatgtaattttttcactt 62
           |||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgaacatcataataatgttcttcactgattctttaatgtaattttttcactt 263

                                                                       
Query: 63  ctcttccacactgatatttttcttctatttgatcaactatacttgtgatggcttcccttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcttccacactgatatttttcttctatttgatcaactatacttgtgatggcttcccttg 323

                                                                       
Query: 123 gtttttatttaaattattgagatgataatttccaacatttctattttttccaaaataccc 182
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gtttttatttaaattattgagatgataatttccaaaatttctattttttccaaaataccc 383

                                                                       
Query: 183 attttcttggtgaatttctcattcatgctattgactttttaatccatgttgttgattttc 242
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attttcttgatgaatatctcattcatgctattgactttttaatccatgttgttgattttc 443

                                                                       
Query: 243 tcagtagttttgttgagtttctcatctgtgctgttgatttttc-tcccaagattacaggt 301
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 tcagtagttttgttgagtttctcatctgtgctgttgatttttcctcccaagattacaggt 503

                                                                       
Query: 302 tgaattcatctgcttggttttaccactttgaatacttaatcatgattactagtaaacatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaattcatctgcttggttttaccactttgaatacttaatcatgattactagtaaacatt 563

                                                                       
Query: 362 taaattctcaatccaactattttcccaactaatatctttaaattcataaattgataaatt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaattctcaatccaactattttcccaactaatatctttaaattcataaattgataaatt 623

                                                                       
Query: 422 atatttttgttttgttttgttttccatgcttcttagtattctatgttataattttgtgtc 481
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 624 atatttttgttttgttttgttttccatgcttcttagtattct--gttataattttgtgtc 681

                                                                       
Query: 482 ccttgcttttggttcttctgctggttttattaggggattttctcaatgggcacccattat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccttgcttttggttcttctgctggttttattaggggattttctcaatgggcacccattat 741

                         
Query: 542 agctgtcatcacca 555
           ||||||||||||||
Sbjct: 742 agctgtcatcacca 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)