Query= MSMg01no340_a19.b1 MSMg01no340_a19.b1 CHROMAT_FILE:
MSMg01no340_a19.b1 PHD_FILE: MSMg01no340_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:00 2005
(596 letters)
>mm_chr11_103088512_103089507
Length = 996
Score = 961 bits (497), Expect = 0.0
Identities = 527/537 (98%)
Strand = Plus / Minus
Query: 5 gaattcatgacgattttacctcccgccctgtgccctcaggggactacattcctggcacgg 64
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaattcatgatgattctacctcccgccctgtgccctcaggggactacattcctggcacgg 478
Query: 65 agacccacatggcaccagaagtggtgatgggaaagccctgcgatgccaaggtggacatct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agacccacatggcaccagaagtggtgatgggaaagccctgcgatgccaaggtggacatct 418
Query: 125 ggagcagctgctgcatgatgctccacatgctcaacggctgccacccctggactcagtact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggagcagctgctgcatgatgctccacatgctcaacggctgccacccctggactcagtact 358
Query: 185 tccgaggcccgctttgtctcaaggtcagcaatggccccaaacagctgtgcagggaggcca 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tccgaggcccgctttgtctcaaggtcagcaatggccccaaacagctgtgcagggaggccg 298
Query: 245 gcagctacgggcccaggccacaggctagtgacagttgttcttctgtgacagatgcgagca 304
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 297 gcagctacgggcccaggccacaggctagtgacagttgttcgtctgtgacagatgtgagca 238
Query: 305 atggcaggtcccttctgcctgttgcccaccagccccccacccccacccccactcccagct 364
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 237 atggcaggtcccttctgcctgttgcccaccagcccaccacccccacccccactcccagca 178
Query: 365 tcctttagactaagtctggaggacatggtatcttgttgccaggcactgtcctgtcctatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcctttagactaagtctggaggacatggtatcttgttgccaggcactgtcctgtcctatt 118
Query: 425 tggatgcaggtttccatgttctaggagcctttccactgactgtagtgcagtcctctccct 484
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 117 tggatgcaggtttccgtgttctaggagcctttccactggctgtagtgcagtcctctccct 58
Query: 485 ccttatagcagacccccaatcaagcgtaaggaaggagggattggtggagagcgaaca 541
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 57 ccttatagcagacccccaatcaagcgtagggaaggagggattggtggagagcgaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_a19.g1 MSMg01no340_a19.g1 CHROMAT_FILE:
MSMg01no340_a19.g1 PHD_FILE: MSMg01no340_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:00 2005
(603 letters)
>mm_chr11_102906676_102907678
Length = 1003
Score = 1145 bits (592), Expect = 0.0
Identities = 601/604 (99%), Gaps = 2/604 (0%)
Strand = Plus / Plus
Query: 1 ttggttatgtgtttatgtgcacttgttcatgaacgctgcttgtgctgtgtggaagtccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggttatgtgtttatgtgcacttgttcatgaacgctgcttgtgctgtgtggaagtccaa 260
Query: 61 ggtcagtgttggttttctcttagccacttgccaccttttttgctcttttgtttttgtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcagtgttggttttctcttagccacttgccaccttttttgctcttttgtttttgtttc 320
Query: 121 ttccccagcacagagtttctctgtagccctggctgctctggaacttgctttgtggaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccccagcacagagtttctctgtagccctggctgctctggaacttgctttgtggaccag 380
Query: 181 gttggcctcgctgggattactgccggccaccaccactgcccaggcctgtcacctttttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggcctcgctgggattactgccggccaccaccactgcccaggcctgtcacctttttga 440
Query: 241 gataggtttctcgttgagtctggagctccatgatctggctagattggctggcccctaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataggtttctcgttgagtctggagctccatgatctggctagattggctggcccctaggg 500
Query: 301 gtcctcctagcgatgcctccccagcagaggattacacatacgccaccattgattgatgac 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gtcctcctagcgatgcctccccagcagaggattacacatacaccaccattgattgatgac 560
Query: 361 ttttgtttaaatgggtgctggagatcaaacttagggcctcttgctggactggcaaacact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgtttaaatgggtgctggagatcaaacttagggcctcttgctggactggcaaacact 620
Query: 421 ttgccagctgagc-gatctctgtagctctaaactattgggtttttgtttgtttttgtttt 479
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgccagctgagctg-tctctgtagctctaaactattgggtttttgtttgtttttgtttt 679
Query: 480 tgtttttgatacaaggtctcatgtaaccaaggttggcttcaaacttctaatcttcctgcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtttttgatacaaggtctcatgtaaccaaggttggcttcaaacttctaatcttcctgcc 739
Query: 540 tctacctcctgagagctaggatttcagatttttactccaaataccaagctaactcttttt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctacctcctgagagctaggatttcagatttttactccaaataccaagctaactcttttt 799
Query: 600 gttt 603
||||
Sbjct: 800 gttt 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
