BAC Information

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BAC

Clone NameMSMg01-341L07
Chromosome11 (Build37)
Map Location 7,342,746 - 7,342,990
singlet/doubletsinglet
Overlap genenone
Upstream geneH2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L07.T7 (MSMg01no341_l07.b1)MSMg01-341L07.TJ (MSMg01no341_l07.g1)
ACCAG455436AG455437
length780787
length of high quality
(start - end)
384 (67 - 450)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no341_l07.b1 PHD_FILE: MSMg01no341_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005CHROMAT_FILE: MSMg01no341_l07.g1 PHD_FILE: MSMg01no341_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGAATTTCCTAGGCAAATAGATAGAACTAGAAAACATCATCCTGA
GTGAGGTACCACAATCGCAAAAGAACACACATGGTATGAACTTAGTGATA
AGTGGATATTAGCCCCAAACCTTGGAATACGTAAGATACAATTCACAGAC
CACATGAAGTTCAAGAAGAAGGAAGACAACAGTGTGGATACATCAGTCCT
TCTTAGAAGGGGGAACAAATTACCCAGGGGAGTAGATACAGATACAAACT
TTGGAGCAGAAACTGAAGGACAGGCCATCCAGTGACTGTCCCACCTGGGA
TCCATCCCATATACAGTTAACAGACCAAGATCCTATTGTGGAAGCCAACA
AGTGCTTGCTGACAGGAGCCTGATATAACTGTCTCCTGAGAGGATCTGCC
AGTGCCTGACAAATACAGAAGTGGATGCTCACAGCCATCCATTGGACAAA
GCATAGGGTCCCCAGTGCTGGATCTATATAAAGGTTCCCTGTCGCCTTAC
CCGGCTTGCATTTTCCTTTTCATGCACCTCTTTTTTTATCCCCCCTTTTT
TCCCTATTTTCTCCCGTTCTTTTTCTTCTTCGCCCTCCTTTTTTTATCTT
GTACTGTTTCTCTATTTTCCTTATTCCCACTTTCTCCTTTTTTTCCTTTT
TTTCCCCCCCCTTTTTTTCCTTCCCTTTTTTTATTGTTCCCCTTTTTCCT
CGCCCCTCACCCTTTTTTTTTCTCTTTTTN
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCATTTCTACAGATCCAAGTTACAG
TCAATCTCATTGATTGGAGCATCGTTTTAGGAGAACTTCCAGGCCTTGTG
CTGATACAGCTGGAGCAACTGATCTTCAAGTTTATTCTTTCTTTCTATCA
GGTGACCAGGGCGTGTCGAATCAATGAGCATCAAAGACCCTGTAATTGTG
TCTTTTGTACTCCAAGTGTCCTTTGGACTGGTGTCCTCGTAAACTAATGA
AAGATCCTGACAGAATGTATAAGGACACAGAAGCCCTGAAATTGGTAAGA
TATATGTCAGTGTTAGCAGAATTAGCTTCACTGATTTAGAAAAATAGATG
CGCACAATGCTCTGCCCACTTCTTGATTCTGTGTGTCTGCCCTCGCCCCT
GATCATTCTCTTGATTCACCGTGTTTTGTCCCCCCGTACGATCCCATTCG
CCCTGTTGCTTGCCTTTTCCGTCTTTCCCCCCCCCTTTCCTATCTTCCCC
CCCTCCCTCCTCCTTTCCTATCCCCTTCCCCTCCTTTTCTCCCCCTTTAT
TCTTTCTTTTTTTTTCCCCCTTTATCTCCTCCCCCCTTCCCCTTTTTATT
TTTTTCTTCTCTCCCCCCTTTTTATTTTTTCTCTCCTTCTCCCCCCCCCC
CTTTTCTTTTCTTCCCCCCCTCCCTTTTTTTCTTCTCTCTTACCTCATCC
TCCCTACCCCCCTTTTCCTTTCCTTTATCCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l07.g1 MSMg01no341_l07.g1 CHROMAT_FILE:
MSMg01no341_l07.g1 PHD_FILE: MSMg01no341_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:01 2005
         (247 letters)



>mm_chr11_7342546_7343192
          Length = 647

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatttctacagatccaagttacagtcaatctcattgattggagcatcgttttaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccatttctacagatccaagttacagtcaatctcattgattggagcatcgttttaggaga 260

                                                                       
Query: 61  acttccaggccttgtgctgatacagctggagcaactgatcttcaagtttattctttcttt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatccaggccttgtgctgatacagctggagcaactgatcttcaagtttattctttcttt 320

                                                                       
Query: 121 ctatcaggtgaccagggcgtgtcgaatcaatgagcatcaaagaccctgtaattgtgtctt 180
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 321 ctatcaggtgaccagggcgtgtcgaatcaataagcagcaaagaccctgtaattgtgtctt 380

                                                                       
Query: 181 ttgtactccaagtgtcctttggactggtgtcctcgtaaactaatgaaagatcctgacaga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttgtactccaagtgtcctttggactggtgtcctcataaactaatgaaagatcctgacaga 440

                
Query: 241 atgta 245
           |||||
Sbjct: 441 atgta 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)