BAC Information

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BAC

Clone NameMSMg01-341L14
Chromosome11 (Build37)
Map Location 48,911,223 - 48,911,721
singlet/doubletsinglet
Overlap geneOlfr56
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, LOC100039796, Ifi47
Downstream geneOlfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L14.T7 (MSMg01no341_l14.b1)MSMg01-341L14.TJ (MSMg01no341_l14.g1)
ACCAG455450AG455451
length754756
length of high quality
(start - end)		506 (43 - 548)387 (73 - 459)
definitionCHROMAT_FILE: MSMg01no341_l14.b1 PHD_FILE: MSMg01no341_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:03 2005CHROMAT_FILE: MSMg01no341_l14.g1 PHD_FILE: MSMg01no341_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGGTGATTGCCTTGAAATGGAGAGACTGTGGCCACGTCTCAGGCCA
AATGGGAAGAAAGGATAGGTCCTATCTAAGTTTCTGCTACACTCACCACA
ACAACGTCAGCCTCAAGAATGGGATTTATCGGTGAACTTGCATCTGAGCC
TTAAGTCATAAAGGAAAGACACTTCATCCCAAAGGCAAAAGAAAAAAAAA
CAATCTGATGAGTTACCGGTATTAAAAAAAATGAAATATAAAGTAGAAAG
GTCCAGCTCAATCTCTCCACAGTGAGACCTGGAAGTCGGGGTGTCTCCAG
GGTGCCAAGACTTTGATCTCACTGTGTCCACTCACCCAACTCAGCCTAGA
ATATCAGGATTCCGCCTACCTCAATTATCACATTATTTACACCCCTCCTT
CTAGTCAGTATATGCAGGAAGATCCTGACTATGTGAATGTAGCTAAACCC
CAGACCCCTCGCCTCACTTCAGCTCCCTCCACCCCTCTCTATGCCTGTCA
GGGAGTAGAGATGCTCCTCCCCAGATCACTTAGGGGTCAGCAACTCCATA
CTCCATGCTTATTCTCAAGCACATGCTCCTGTTTCCTCACCATCTCCCTG
AACCCCGAACACCATTATGACCTCCTCTGGGAAGAAGAAAGAAACTCCCG
GAGGTGAAAAGCCAACCTTGATCTCTCCCCAGCCTAAAATAACGATCCTT
CCTG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTCTTTCCTACTGAAACTCTCATTTA
TTACTTCCTGCCTTTTGCTCATTGGCCAACAGCATTTTATTGACAGGTGA
TGCTTCCATGCATTGCACAAGAGACTCTACAGGAGAAGGCTTTGAATATG
TCAGATGACCTCTTCTACTGTAAATGCCCCCTTTTTTTTTTTAAATTTTA
TTTATTCATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAA
GAGGGCGTCAGATCCCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCT
GGGATTTGAACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCAC
TGAGCCATCTCACCAGCCCTAAATGCCCCTTTTTAATCAATTGAAGTCCT
TAGAGAAAACAAACAAACTAACCCCAAGACAATAAAACCCTTGTCATTCC
TTAGGGAAGAGAGAAGAGAAAATTCTTGCTGTTTGGACCGCAGCTGCAAT
ACCAACTCTTCCCAGGGTTCCAGGCTTATAACTCCTCTCTGTAAATTTTG
TGTTTGCCCCGTCTTCTTCTTCCGGTGCCATTTACCTATTTTACTTGCCG
TATATTATACCTCGTATCCCCGTTTCCCCATTTTCCAACCATTTCTCTTC
CCATTTTCTCCCTTCTTTTTATCCCGTTCCTTACCCTCATCCTCTCTTCC
TTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l14.b1 MSMg01no341_l14.b1 CHROMAT_FILE:
MSMg01no341_l14.b1 PHD_FILE: MSMg01no341_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:03 2005
         (506 letters)



>mm_chr11_48911020_48911922
          Length = 903

 Score =  936 bits (484), Expect = 0.0
 Identities = 497/502 (99%), Gaps = 3/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagggtgattgccttgaaatggagagactgtggccacgtctcaggccaaatgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggaattccagggtgattgccttgaaatggagagactgtggccacgtctcaggccaaatgg 643

                                                                       
Query: 64  gaagaaaggataggtcctatctaagtttctgctacactcaccacaacaacgtcagcctca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaagaaaggataggtcctatctaagtttctgctacactcaccacaacaacgtcagcctca 583

                                                                       
Query: 124 agaatgggatttatcggtgaacttgcatctgagccttaagtcataaaggaaagacacttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agaatgggatttatcggtgaacttgcatctgagccttaagtcataaaggaaagacacttc 523

                                                                       
Query: 184 atcccaaaggcaaaagaaaaaaaaacaatctgatgagttaccggtattaaaaaaaatgaa 243
           ||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||
Sbjct: 522 atcccaaaggcaaaagaaaaaaaa--aatctgatgagttaccggtatt-gaaaaaatgaa 466

                                                                       
Query: 244 atataaagtagaaaggtccagctcaatctctccacagtgagacctggaagtcggggtgtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atataaagtagaaaggtccagctcaatctctccacagtgagacctggaagtcggggtgtc 406

                                                                       
Query: 304 tccagggtgccaagactttgatctcactgtgtccactcacccaactcagcctagaatatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tccagggtgccaagactttgatctcactgtgtccactcacccaactcagcctagaatatc 346

                                                                       
Query: 364 aggattccgcctacctcaattatcacattatttacacccctccttctagtcagtatatgc 423
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aggattccccctacctcaattatcacattatttacacccctccttctagtcagtatatgc 286

                                                                       
Query: 424 aggaagatcctgactatgtgaatgtagctaaaccccagacccctcgcctcacttcagctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aggaagatcctgactatgtgaatgtagctaaaccccagacccctcgcctcacttcagctc 226

                                 
Query: 484 cctccacccctctctatgcctg 505
           ||||||||||||||||||||||
Sbjct: 225 cctccacccctctctatgcctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 903
Length adjustment: 10
Effective length of query: 496
Effective length of database: 893
Effective search space:   442928
Effective search space used:   442928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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