Query= MSMg01no341_p02.b1 MSMg01no341_p02.b1 CHROMAT_FILE:
MSMg01no341_p02.b1 PHD_FILE: MSMg01no341_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:19 2005
(400 letters)
>mm_chr11_52033319_52034113
Length = 795
Score = 642 bits (332), Expect = 0.0
Identities = 378/396 (95%), Gaps = 5/396 (1%)
Strand = Plus / Minus
Query: 5 gaattcaatgggttcctgttcagaagcctgttctgacccggtctgaccagcagaggcctc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaattcaatggggtcctgttcagaagcctgttctgacccggtctgaccagcagaggcctc 536
Query: 65 gaaccagtacagcttggtccaatcctccagcgagcacggggccagtgctcctctgtgaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaaccagtacagcttggtccaatcctccagcgagcacggggccagtgctcctctgtgaaa 476
Query: 125 tgagttcacattgggttggacagcaggggttggagggctttcttaggaggcttgagctag 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgagttcacattgggttgggcagcaggggttggagggctttcttaggaggcttgagct-- 418
Query: 185 gacaggtgataaggaggaagatggctttagaagtctccttgccggacctctgtggaggca 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 417 ---aggtgataaggaggaagatggctttagaagtctccttgcccgacctctgtggaggcg 361
Query: 245 gagagaggggcatcaagcgtcgctgcgtgaaaggcgaacacaatcccaggaacttgagca 304
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 360 gagagaggggcatcaagcatcgctgcgtgaaaggcaaacacaatcccaggaacttgagca 301
Query: 305 cgagacaatgatctcgttttctttttattcattatttactttttgagctggggtgaggct 364
|||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgagagaaggatctggttttctttttattcattatttactttttgagctggggtgaggct 241
Query: 365 aagcttgtggtagaagtcattaggaaaatgtaggga 400
||||||||||||||||| ||||| |||||||||||
Sbjct: 240 cagcttgtggtagaagtcgttaggcaaatgtaggga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 795
Length adjustment: 9
Effective length of query: 391
Effective length of database: 786
Effective search space: 307326
Effective search space used: 307326
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_p02.g1 MSMg01no341_p02.g1 CHROMAT_FILE:
MSMg01no341_p02.g1 PHD_FILE: MSMg01no341_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:19 2005
(314 letters)
>mm_chr11_51898168_51898881
Length = 714
Score = 600 bits (310), Expect = e-176
Identities = 313/314 (99%)
Strand = Plus / Plus
Query: 1 ctgcccatagactccagtgtgcacaataaactggtagttattttataccagtaggttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcccatagactccagtgtgcacaataaactggtagttattttataccagtaggttgga 260
Query: 61 gcagtctgttacatagctatcaaagtaaaagtcctattgtcttcagtactaccagaaagt 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gcagtctgttacatagctatcaaagtaaaagccctattgtcttcagtactaccagaaagt 320
Query: 121 gcacagtaaggacgagaaacgaacaagcatggtgcctcacgccactgatcccaggactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacagtaaggacgagaaacgaacaagcatggtgcctcacgccactgatcccaggactca 380
Query: 181 ggcggaggcaagaagtttattcatgagtttgaggccaccttgggacacagagtaagacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcggaggcaagaagtttattcatgagtttgaggccaccttgggacacagagtaagacag 440
Query: 241 tctcaaaaaggaaaacaacaacaacaaatacatacagatgagtaaaggcaagggtggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcaaaaaggaaaacaacaacaacaaatacatacagatgagtaaaggcaagggtggcag 500
Query: 301 agactgttacaaaa 314
||||||||||||||
Sbjct: 501 agactgttacaaaa 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
