Query= MSMg01no342_a03.b1 MSMg01no342_a03.b1 CHROMAT_FILE:
MSMg01no342_a03.b1 PHD_FILE: MSMg01no342_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:24 2005
(516 letters)
>mm_chr11_116173641_116174555
Length = 915
Score = 654 bits (338), Expect = 0.0
Identities = 359/366 (98%), Gaps = 2/366 (0%)
Strand = Plus / Minus
Query: 151 ttaaatgcatttccacttttttttaaaggtttatttatttattatatgtaagtacactgt 210
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ttaaatgcatttccac-tttttttaaaggtttatttatttattatatgtaagtacactgt 857
Query: 211 agctgtcttcagacacaccagaagagggcatcggatctcattacagatggttgtgagtct 270
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 856 agctgtcttcagacacaccagaagagggcatcgggtctcattacagatggttgtgagcca 797
Query: 271 ttatgttgttgctgggatttgaactcatgaccttcagaagagcagtcggcattcttaacc 330
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tcatgttgttgctgggatttgaactcatgaccttcagaagagcagtcggcattcttaacc 737
Query: 331 cctgagccatctctccagcccacatttccacttttgctacagggccaggaaacattaatt 390
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cctgagctatctctccagcccacatttccacttttgctacagggccaggaaacattaatt 677
Query: 391 tagaaaaattacccaattgatttcccaggaaagacacaaagcccatagtagttaaactaa 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tagaaaaattacccaattgatttcccaggaaagacacaaagcccatagtagttaaactaa 617
Query: 451 agaacacactggttggtggagggacatcctccactccttctttctctcggggccaccctc 510
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agaacacact-gttggtggagggacatcctccactccttctttctctcggggccaccctc 558
Query: 511 cttcct 516
||||||
Sbjct: 557 cttcct 552
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 915
Length adjustment: 10
Effective length of query: 506
Effective length of database: 905
Effective search space: 457930
Effective search space used: 457930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_a03.g1 MSMg01no342_a03.g1 CHROMAT_FILE:
MSMg01no342_a03.g1 PHD_FILE: MSMg01no342_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:24 2005
(512 letters)
>mm_chr11_115987933_115988844
Length = 912
Score = 878 bits (454), Expect = 0.0
Identities = 510/556 (91%), Gaps = 44/556 (7%)
Strand = Plus / Plus
Query: 1 ctcatggcttccttggagctggaatcctctacctgccccacgttacaagaggggaaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ctcatggcttccttggagctggaatcctctacctgccccacgttacaagaggggaaactg 216
Query: 61 aggctcggagagttaagctcacatactattaggtggaagaactgggatggaccccagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aggctcggagagttaagctcacatactattaggtggaagaactgggatggaccccagaat 276
Query: 121 gtgccctttaacactatgctggctgcatctgcctcaggataaatgtggggaaggtttaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtgccctttaacactatgctggctgcatctgcctcaggataaatgtggggaaggtttaca 336
Query: 181 acccacagctgatgtgcggaggtggggacaggtcgggggaggagtgtggacaggacagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acccacagctgatgtgcggaggtggggacaggtcgggggaggagtgtggacaggacagtt 396
Query: 241 agagcagcccccccc---atacatacagaagcatatgcatgcacacaggcattgcgtctt 297
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agagcagcccccccccccatacatacagaagcatatgcatgcacacaggcattgcgtctt 456
Query: 298 gcacataattgtca------------------------------cata-----------c 316
|||||||||||||| |||| |
Sbjct: 457 gcacataattgtcatatgcacgcacacaggcattgcgtcttgcacataattgtcacatgc 516
Query: 317 acgcacacaggcattgcgtctccttactctgccagagcttcttcctcagtggacacactg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acgcacacaggcattgcgtctccttactctgccagagcttcttcctcagtggacacactg 576
Query: 377 cgctggggactggtgccaggggacccagggtctcttaaaacaaagaagagttaaagaagt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cgctggggactggtgccaggggacccagggtctcttaaaacaaagaagagttaaagaagt 636
Query: 437 aaataggaattacctgactccgcctaccccggactccgcctatccctgaccccgcctatc 496
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 637 aaataggaattacccgactccgcctaccccggactccgcctatccctgaccccacctatc 696
Query: 497 cacgactccgcctacc 512
||||||||||||||||
Sbjct: 697 cacgactccgcctacc 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
