BAC Information

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BAC

Clone NameMSMg01-342C06
Chromosome11 (Build37)
Map Location 31,650,624 - 31,651,022
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
Downstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342C06.T7 (MSMg01no342_c06.b1)MSMg01-342C06.TJ (MSMg01no342_c06.g1)
ACCAG455764AG455765
length749743
length of high quality
(start - end)
399 (60 - 458)418 (64 - 481)
definitionCHROMAT_FILE: MSMg01no342_c06.b1 PHD_FILE: MSMg01no342_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:34 2005CHROMAT_FILE: MSMg01no342_c06.g1 PHD_FILE: MSMg01no342_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXAAGCACAGAGGATCCGCGGAATTCAACCTC
TATCTTTCTTGTAGGTGGAAGAAAACAAAAAACAAAACAAAACACCAGAA
AGCAAAGAAAGTGGCGATCTCTAAGAGCACTGGGTGAGGTCTTGGAGTCA
GACACAGGGAATGCTGGAATGCTACCCAGAGGCAATGGATTTACATAAGA
TCTGGGCTGCAGTGAGGCATGGCTCAGTCTGAGTCCCAGTTGAGTTGACT
GGGCAAGTGGGGTACAGCATGAAGGTCTGACCTGCAGAGCAGCAATAAAT
TGAATCATTGTTAACTGGGGCAGCTGAGGGAGGGGTCAGGAGATAGAGAT
CCAGTCTGTCAGCTAAACAGCTAGGAAGGACCCCAGGAACAGAGAGGACT
AGAAGGTTCCAGCGAACAGTGATGCATTCTTAATAGGATGTGCTTGGATG
TGCATTAGTCCTTTGTCTGTTCACAGAGGATAGACGTCTGGAGCCCTGAA
TAACTGATAGTCCCTGATATATAATGCCTGCCATCACACATGATGTGACA
AAGTCCTTTCCTATAGGTCTTTGCTTTCCCAACACATCACTAGCCTTGCC
ATTGGCTTCCGCCTTATCACACGATGTTCTCGATCTATATTCCTCCCCTA
GTCTCTCTATTCCTAAATCCATGCTATTTCCACTCCCTCCGGCGTATTCT
TGATTTCTGTCAAATATCCCCCGCTTATTATTCACTCTCCTCTTTTCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAAATGCTTATGCACTCAGTCTCACATACCTGAAACA
GAACCTGGCAGAACTAGGAAGAAATCGAGGCATATCCATCCACTATGGGA
GACTTTACCATATGCCTCTCAAGGAAAATGTAAGTGGGGGGGGGGGGGGA
AACTCAGTAAGGATGTCTCAGATCTACAAAGCGCAGATAACAAGAACTAC
AAGAACTTATGTTCTTTCCAGAGACAAGTGGAACATTTAGGCCAGCCAGA
AAAAAAGTCAAAACAAATTTCAAAAGATTGATATTACTCAGAATCTGTTC
TCTGACCACAGAAGAATGAAGCTGGAAATCAATAACGAAAGAAATTCCAC
AAATGCTTGGAAATTAAGCAGTATACTAAATGGGTCAAAGAAAAAATTCC
CAGCAGAAACTGAAAAATATTTTTTAAATGATAGTGAATATATAATATCA
TAATATAGGATGTGGTTAAATCTGCTTGAAAAAAAATTATGGTCTTAAAA
ACTTATATCTTAAAATATCCAAACGACCCTAGCCTTAAGCCATTCTTTTT
TCTCTGTCCCCGATTATATACCATTATCACCCCCCACATTCTTTTTATTC
CCTAAGTTCCCTTTCATAGAAGTGGCTAGGATTTAAACTTTTCCCACTTT
TTTGCTTCTTCTTTCCTACATTTTTTACTCACATACCTCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_c06.b1 MSMg01no342_c06.b1 CHROMAT_FILE:
MSMg01no342_c06.b1 PHD_FILE: MSMg01no342_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:34 2005
         (399 letters)



>mm_chr11_31650424_31651222
          Length = 799

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaggtggaagaaaacaaaaaacaaaacaaaacaccagaaagcaaagaaagtggcgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tgtaggtggaagaaaacaaaaaacaaaacaaaacaccagaaagcaaagaaagtggcgatc 540

                                                                       
Query: 61  tctaagagcactgggtgaggtcttggagtcagacacagggaatgctggaatgctacccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tctaagagcactgggtgaggtcttggagtcagacacagggaatgctggaatgctacccag 480

                                                                       
Query: 121 aggcaatggatttacataagatctgggctgcagtgaggcatggctcagtctgagtcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aggcaatggatttacataagatctgggctgcagtgaggcatggctcagtctgagtcccag 420

                                                                       
Query: 181 ttgagttgactgggcaagtggggtacagcatgaaggtctgacctgcagagcagcaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttgagttgactgggcaagtggggtacagcatgaaggtctgacctgcagagcagcaataaa 360

                                                                       
Query: 241 ttgaatcattgttaactggggcagctgagggaggggtcaggagatagagatccagtctgt 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttgaatcattgggaactggggcagctgagggaggggtcaggagatagagatccagtctgt 300

                                                                       
Query: 301 cagctaaacagctaggaaggaccccaggaacagagaggactagaaggttccagcgaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagctaaacagctaggaaggaccccaggaacagagaggactagaaggttccagcgaacag 240

                                                  
Query: 361 tgatgcattcttaataggatgtgcttggatgtgcattag 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgatgcattcttaataggatgtgcttggatgtgcattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)