BAC Information

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BAC

Clone NameMSMg01-342E06
Chromosome11 (Build37)
Map Location 21,749,032 - 21,749,348
singlet/doubletsinglet
Overlap geneAV249152
Upstream geneLOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, Pgam1-ps1
Downstream geneLOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342E06.T7 (MSMg01no342_e06.b1)MSMg01-342E06.TJ (MSMg01no342_e06.g1)
ACCAG455859AG455860
length815732
length of high quality
(start - end)
320 (35 - 354)393 (66 - 458)
definitionCHROMAT_FILE: MSMg01no342_e06.b1 PHD_FILE: MSMg01no342_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:44 2005CHROMAT_FILE: MSMg01no342_e06.g1 PHD_FILE: MSMg01no342_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCCCT
TGCTCTTAGTATACAATAGTTAAAAATAAACTACTGAAAGATTTTTTCTT
TCAAATAATATCCTTCTAATAAGCAAGATTTTTTACTCAGTAAAATTAGC
AGGCTCATACTATCTTATCCCAGGAGCTTGACAAATACCTCTTTTCTCTC
CAGTGATCCAGACCTTCCTCTTTCTGATGCCAAGGGGTAAAAGTGCACAC
TGCTGTGATCTATAATTTTCAGTGATCAATGTTGAATTCTATAAAACTTT
TGAAAATCTTAATCTTTGTGATATATATATGTATGTATATGTGTGTGTGT
GTGTGCGCCGTCCCCCACACATTTTTACACACTTAATCCTCCTTTTTATT
TTTTACCCCTTTTATTTTCTCCCTATTATTTCTTTCTTCTCCCATATTTA
CACTCTCTCTTCCTCCTCTTTCCCCCTTTCCCTTTTTTCCTTTCACTTAC
TTTTTTTTCCACCCCTATTCTTTTCTCTTTTCCTCTAATTCCACCGTACC
TCTTCTTCTGTTTTTTATCAATCTTTTTACTCTTTCCTTACTTCTACCAT
CTTTTTATCCACCCTTCTTTTTTCCCTCCTTCATACCTTTTATTTTTTCT
CCCCTATATACTCCCCTTTCCGTCTACTCTTCTTTCTCTCCCCCCCCGTT
TACTTCATTTCTCCTATCCATTCTTCAACATGTTCAAATCATATTACTAA
TCTTACATCTTCTATCCTTCACTTATATCAATACACCCTCTATTATCCGT
ACTCATCTCTTCTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTACTGTTTGCCTGCATTTTCCTGTATTTCTTTATG
GGAGTTCTTTATATCCTCCTTAAAGACCTCTATCATCTTCATGAGATGGG
ACTTTAGGTTATTATCTTGCTTTCCATGTGTGTTTGCTGTGGTTCTGATG
GGGCCGGATTGTATTGGGTTCTGTTGATTATGATCTTGTGCTTGCCTCTG
GCCATCTGGTTCTCTCTGGTGTTAATTGGCCTGGGTGTCTCTGACTGGAG
CCAGCCTCCTTGGAAGCAGGTAGAGCTCTGTGACCTGAGTTAGAGCTGGT
ATCCTTGGAAGCAGGCAGTGTTGACTCTGGCTAGTGTGGGCCTCCTATGT
CTCTAGTTAGAGCAGGCCTCCTATGTCTCTGGTTAGAGTAGATCTTCTGT
GCCTTTGGTTACTGCGGACCTCTTGGGAGGCTTGCAGGTTGTATTGGTTG
GAAGGGTTATCATGCCACTGGTCTGGCCTCAGTGGTGACGGGAAACTATC
ACTATTTTGTTCGCTCGCCACCGCCATATAACAATTTTCTATTTCTGTCC
CCCTCTTTCTCACGTGTCCCCCCCAATTCCTTTTTTTTCTCTTTGTTCTA
TCTCTTCTCTCTCGACTCACTTTTTTTTTTTTCCCTCTTTTTTCGTATTA
TTCCCCCTTTTTCTTCTCTTCTTCCTTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_e06.b1 MSMg01no342_e06.b1 CHROMAT_FILE:
MSMg01no342_e06.b1 PHD_FILE: MSMg01no342_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:44 2005
         (320 letters)



>mm_chr11_21748829_21749548
          Length = 720

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcccttgctcttagtatacaatagttaaaaataaactactgaaagatttttt 63
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcccaagctcttagtatacaatagttaaaaataaactactgaaagatttttt 263

                                                                       
Query: 64  ctttcaaataatatccttctaataagcaagattttttactcagtaaaattagcaggctca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttcaaataatatccttctaataagcaagattttttactcagtaaaattagcaggctca 323

                                                                       
Query: 124 tactatcttatcccaggagcttgacaaatacctcttttctctccagtgatccagaccttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tactatcttatcccaggagcttgacaaatacctcttttctctccagtgatccagaccttc 383

                                                                       
Query: 184 ctctttctgatgccaaggggtaaaagtgcacactgctgtgatctataattttcagtgatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctttctgatgccaaggggtaaaagtgcacactgctgtgatctataattttcagtgatc 443

                                                                       
Query: 244 aatgttgaattctataaaacttttgaaaatcttaatctttgtgatatatatatgtatgta 303
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 444 aatgttgaattctataaaacttttgaaaatccaaatctttgtgatatatatatgtatgta 503

                            
Query: 304 tatgtgtgtgtgtgtgt 320
           |||||||||||||||||
Sbjct: 504 tatgtgtgtgtgtgtgt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)