BAC Information

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BAC

Clone NameMSMg01-344G01
Chromosome11 (Build37)
Map Location 27,598,388 - 27,598,695
singlet/doubletsinglet
Overlap geneLOC100042377
Upstream genePpia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneEG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344G01.T7 (MSMg01no344_g01.b1)MSMg01-344G01.TJ (MSMg01no344_g01.g1)
ACCAG457457AG457458
length749763
length of high quality
(start - end)
314 (46 - 359)162 (68 - 229)
definitionCHROMAT_FILE: MSMg01no344_g01.b1 PHD_FILE: MSMg01no344_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:32 2005CHROMAT_FILE: MSMg01no344_g01.g1 PHD_FILE: MSMg01no344_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCCTTGTATTCCTGCTAAATTTCCACCAAGCCTTAAAGAAAAATG
ATGTGTATCTTAAAGAAAAATGATGTGTGTCTACAGTCCCATAGTTATTC
CCAACTGACACACACATACATAATCTTCTTATGTCTCGTGCTCTGAAAAC
CAAAAAGACAAGTTAAGCACATCTGTTCTCTCCAGCTAGCAACAAAGAAC
AAAAACTTAAAAGTTACTCCAAAACTCCAGAGCAGAATTGTTTCTAGGCC
AGATGCTGGGGAAGATTTTAATTTATGTTTTTGATTAGAGATATTTTAGA
TAGTGGAAGCCAAATATACAACTTCCAAATACTCAACTCTATATTGTGCA
TAAGTCAGACATGTGTAACTATTTCTATAAGTGTGGCTATCCAGATACAT
ACCACATTTAATAACTGTCCCAATTTGGACTTGCTTAAATAACTTTTATA
CTTCCAATCCTAGATATGCTTGTTTTTAATATGCTATTATCTTATATTAT
TAAACATTCTCATTTATTAATGTCTTTCCCCTGAAATATATTTACAAGAT
ATATGTTTATTTTAATATCGTAACATTCTTGTTTATCTCCGCCCCTTATA
GTCTAACTGTTCTCTCATTTGTTATGCCCAATTTCTTTATTTTTTATCTT
TTAAATGTAAAATATTTTACCTCGATATATTCTTCTATCTTAACCATAC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTCTGTAGACCAGCCTAGCCTCAAAATCAGAA
ATCCACCTGCCTTTGCCTCCCAAGTGCTGTGATTAAAGGAATTTACCACC
ACTGCTCAGCAACATTAGGTTCCTTAACTGATGGGAGGCAAACGAGTGTT
TTCCTTAGGAGGTCACAAATGATAGGCTTAAGTAGCTGAGGCTCTATAGA
GACGGACGGTATGGAGCTTGCGGGATGTATCGGGTAGAGTCCAAAGGACA
TAGAGCCTCCCTACTTAGCTAAAAGATCCCTGCCCAATAAAGGGACATCT
ATCTCACAGTACACCTTGAAGACCAGTGCCTGTGGACTTAGGGGCCCCCT
TCCGCAGCTTTCGAAGTTTAGCTTTTATGCGAGGATAGCACTGGCGGAAA
AAGTTGGTCATCAGAACTTGCTTACCTTATGGGGTTTTAGGGTGCAGATT
CGTGTACGCGCCTATACGGCGTTTGCGAGGCGTTCCAACGATTGGCACGC
GGCCCCCCTGTTTTGTTCCTATTCGACCTCTCGGTAGTCGAGTCAAAATC
GATTTGCTCTTCTGTCTCTATATCCGCTTACGGCTCGCGCATAATAGAAT
GTTAAATATAACTTGGATCCCCGGTTCTTATACTACTTACACGGGTGTAA
CGTTGCCACACTCTTATTGTAATTAATAACAGGTCCCACCCCACGGTGCC
ATTTGACTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_g01.b1 MSMg01no344_g01.b1 CHROMAT_FILE:
MSMg01no344_g01.b1 PHD_FILE: MSMg01no344_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:32 2005
         (314 letters)



>mm_chr11_27598183_27598895
          Length = 713

 Score =  505 bits (261), Expect = e-147
 Identities = 297/309 (96%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattccttgtattcctgctaaatttccaccaagccttaaagaaaaatgatgtgtatct 65
           ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccttg-atgcttgctaaatttccaccaagccttaaagaaaaatgatgtgtatct 264

                                                                       
Query: 66  taaagaaaaatgatgtgtgtctacagtcccatagttattcccaactgacacacacataca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaagaaaaatgatgtgtgtctacagtcccatagttattcccaactgacacacacataca 324

                                                                       
Query: 126 taatcttcttatgtctcgtgctctgaaaaccaaaaagacaagttaagcacatctgttctc 185
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatcttcttatgtctcatgctctgaaaaccaaaaagacaagttaagcacatctgttctc 384

                                                                       
Query: 186 tccagctagcaacaaagaacaaaaacttaaaagttactccaaaactccagagcagaattg 245
           |||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 385 tccagctagcaacaaacaacaaaaaccaaaaagttactccaaaactccagagcagaattg 444

                                                                       
Query: 246 tttctaggccagatgctggggaagattttaatttatgtttttgattagagatattttaga 305
           |||||||||||||||||||||||||||||||   | | ||||||||||||||||||||||
Sbjct: 445 tttctaggccagatgctggggaagattttaaacaaagcttttgattagagatattttaga 504

                    
Query: 306 tagtggaag 314
           |||||||||
Sbjct: 505 tagtggaag 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)